Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40283
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    59   3e-10
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    27   1.4  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    25   3.3  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    24   7.6  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    24   7.6  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    24   10.0 
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    24   10.0 
SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr...    24   10.0 

>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 58.8 bits (136), Expect = 3e-10
 Identities = 38/119 (31%), Positives = 55/119 (46%)
 Frame = +1

Query: 22  VKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 201
           +K  ELR +                 +LRV K+ GG  SKLSKI+  RK IAR+  V ++
Sbjct: 3   LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVINE 62

Query: 202 KMKVNLRNHYKNKKYKPLI*EPRRPVLCARLLLNTKQRSRRGKRSERNLSSHLESMPLK 378
             ++  R  YKNKKY PL    ++     R L   +Q  +  K+ ++     L    LK
Sbjct: 63  SNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRKTLKQIKKERYFPLRKYALK 121



 Score = 52.4 bits (120), Expect = 2e-08
 Identities = 25/42 (59%), Positives = 32/42 (76%)
 Frame = +3

Query: 255 DLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 380
           DLR KKTRA+R+ALT +E   KT K+I+K+  FP R YA+KA
Sbjct: 81  DLRQKKTRAIRRALTPYEQSRKTLKQIKKERYFPLRKYALKA 122


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -2

Query: 392 IIYSSFNGIDSRW---EERFLSDLFPRLDLCF 306
           +++ +F  + + W   E  FLS +FPR   CF
Sbjct: 246 VVFGAFPSLHAGWAMLEALFLSHVFPRYRFCF 277


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -1

Query: 267 WLLNQRLVFLVFVVVSKIDLHLLVIHNVNTCDSFSYNTDLG 145
           ++ N+RLV  +    S++  H L+++ +NT  S +   +LG
Sbjct: 410 YIRNERLVSQMLQAASQLHYHDLILYVINTYYSGNIMKNLG 450


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 243 IQAFDLRAKKTRAMRKALTKHEAKIKTRKEI 335
           IQ+F +  +K   ++K + + E +I+  KEI
Sbjct: 567 IQSFKIAERKALDLKKEVAEREKRIQRLKEI 597


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 255 DLRAKKTRAMRKALTKHEAKIKTRKEIRKKS 347
           D++ K  RAMR+ +   +   +  +++RKK+
Sbjct: 677 DMQTKAKRAMRETMVFWKRNERVERDLRKKA 707


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 234 FVVVSKIDLHLLVIHNVNTC 175
           F+V+SK+DL  L + N N C
Sbjct: 362 FLVLSKLDLMHLSVSNDNDC 381


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 171 SFSYNTDLGQFRSNSTSNFSNPK 103
           +F+Y+ D G FR  + +NF +P+
Sbjct: 262 AFNYHFDNGVFRGLAFANFHSPE 284


>SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 184

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 234 KQEIQAFDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSL 350
           KQ ++A  +    +  +    + H AK+K R+ +R   L
Sbjct: 117 KQALRAKAIAESSSTKLESRKSAHNAKVKQRQRLRASGL 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,348,653
Number of Sequences: 5004
Number of extensions: 21516
Number of successful extensions: 69
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)