Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40283
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465... 68 3e-12
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 38 0.002
12_01_0152 - 1168928-1169377 28 3.1
11_01_0155 - 1287003-1287452 28 3.1
12_02_0172 - 14891923-14892102,14892894-14892980 27 7.2
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721... 27 7.2
06_03_0904 + 25832026-25832643 26 9.5
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660... 26 9.5
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 26 9.5
>02_03_0340 +
17946133-17946136,17946207-17946342,17946428-17946584,
17947330-17947458
Length = 141
Score = 67.7 bits (158), Expect = 3e-12
Identities = 38/87 (43%), Positives = 48/87 (55%)
Frame = +1
Query: 13 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 192
M ++K ELR K+ + LRVAKVTGG +KLSKI+VVR +IARV V
Sbjct: 1 MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60
Query: 193 YHQKMKVNLRNHYKNKKYKPLI*EPRR 273
QK + LR YK K PL P++
Sbjct: 61 ISQKQRAALREAYKKKSLLPLDLRPKK 87
Score = 39.1 bits (87), Expect = 0.001
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 18/91 (19%)
Frame = +3
Query: 162 KKSYRTCLHCVSPEDEGQS*KPLQKQEIQAFDLRAKKTRAMRKALTKH------------ 305
+ S L +S + + +K+ + DLR KKTRA+R+ LTKH
Sbjct: 51 RTSIARVLTVISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQLCYTCIRLLTF 110
Query: 306 ------EAKIKTRKEIRKKSLFPPRVYAVKA 380
+ +KT +E +++ FP R YA+KA
Sbjct: 111 SMVAISQLSLKTEREKKREKYFPMRKYAIKA 141
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 38.3 bits (85), Expect = 0.002
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = +1
Query: 1 VTVKMGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIAR 180
VTV M ++K LR ++ + LRVA+VTGG +KLS I+ VR A+
Sbjct: 104 VTVAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALRE 162
Query: 181 VY 186
Y
Sbjct: 163 AY 164
Score = 31.5 bits (68), Expect = 0.25
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 231 QKQEIQAFDLRAKKTRAMRKALTKHEAKI 317
+K+ + DLR KKT A+R+ LTKH+ +
Sbjct: 167 KKKSLLPLDLRPKKTCAIRRRLTKHQGML 195
>12_01_0152 - 1168928-1169377
Length = 149
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 115 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 204
+V GG K S+I +R+AIA+ + Y+QK
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101
>11_01_0155 - 1287003-1287452
Length = 149
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 115 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 204
+V GG K S+I +R+AIA+ + Y+QK
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101
>12_02_0172 - 14891923-14892102,14892894-14892980
Length = 88
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 109 VAKVTGGVASKLSKIRVVRKAIARVY--IVYHQKMKVNLRNHYKNKKYK 249
+A + GV K+S A R +V H+ +++ RNH ++KY+
Sbjct: 1 MANLQVGVTRKISDPNTKAVATDRTIRNLVCHEDLRLTCRNHLSHQKYR 49
>04_04_0623 +
26669284-26669421,26670906-26671564,26671948-26672140,
26672220-26672284,26672399-26672609,26673284-26673515,
26674463-26674521,26674651-26674680,26674761-26674850
Length = 558
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -1
Query: 207 HLLVIHNVNTCDSFSYNTDLG 145
H +HN N CDS Y D G
Sbjct: 396 HYWPVHNDNKCDSIKYAVDWG 416
>06_03_0904 + 25832026-25832643
Length = 205
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +3
Query: 231 QKQEIQAFDLRAKKTRAMRKALT----KHEAKIKTRKEIRKKSLFPPRVYAVKA 380
+K Q FDL+ R+A + E K+K +K I K ++ R+YA A
Sbjct: 5 EKLMTQIFDLKFTSKSLQRQARKCEKEEKEQKLKVKKAIEKGNMDGARIYAENA 58
>06_03_0785 - 24563310-24565004,24565302-24565384,24565484-24566039,
24566397-24566513,24566565-24567131,24568632-24568702,
24569833-24569903,24570270-24570441,24571229-24572212,
24573128-24574808
Length = 1998
Score = 26.2 bits (55), Expect = 9.5
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Frame = +1
Query: 118 VTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYK-NKKYKPLI----*EPRRPVL 282
+T G+ +KL +RV+ K+ A + HQ V + KK + ++ R L
Sbjct: 1419 LTHGILAKLKGVRVLDKSYALMLTGMHQLPCVEGSGEFHVGKKGQSIVGLKDLNELRGEL 1478
Query: 283 CARLLLNTKQRSRRGKRSERNLSSHLESMPLK 378
RLL N K + K + L H+ + L+
Sbjct: 1479 AIRLLENVKTKEEAAK-ANLELKKHIRKLELE 1509
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 26.2 bits (55), Expect = 9.5
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = -1
Query: 159 NTDLGQFRSNSTSNFSNPKI 100
NT+ G+++ + SNFS+P++
Sbjct: 1266 NTENGRYKGRAPSNFSSPRV 1285
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,397,958
Number of Sequences: 37544
Number of extensions: 125980
Number of successful extensions: 372
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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