Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40283
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)         79   2e-15
SB_733| Best HMM Match : DUF789 (HMM E-Value=1.3)                      29   1.4  
SB_49312| Best HMM Match : Mucin (HMM E-Value=0.19)                    28   3.2  
SB_38972| Best HMM Match : PIP5K (HMM E-Value=0)                       28   3.2  
SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)                        28   3.2  
SB_45390| Best HMM Match : Glyco_transf_10 (HMM E-Value=2.5e-20)       27   4.3  
SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1)                  27   4.3  
SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_21676| Best HMM Match : TrbF (HMM E-Value=0.99)                     27   5.6  
SB_17850| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_22463| Best HMM Match : VWA (HMM E-Value=0)                         27   7.4  
SB_3748| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.4  
SB_19985| Best HMM Match : WH2 (HMM E-Value=1.9)                       26   9.8  

>SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)
          Length = 131

 Score = 78.6 bits (185), Expect = 2e-15
 Identities = 47/111 (42%), Positives = 60/111 (54%)
 Frame = +1

Query: 19  KVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYH 198
           KVK  ELR K                + LRVAKVTGG ASKLSKI+VVRK++ARV  V  
Sbjct: 11  KVKAHELRGKKKDELLKQLDELKTELSQLRVAKVTGGAASKLSKIKVVRKSVARVLTVVS 70

Query: 199 QKMKVNLRNHYKNKKYKPLI*EPRRPVLCARLLLNTKQRSRRGKRSERNLS 351
           Q  + NLR  Y+ KKY PL   P+      R  L  K+ S +  + ++ L+
Sbjct: 71  QTQRDNLRKFYRKKKYLPLDLRPKL-TRAMRRSLTKKEASSKTLKQQKKLA 120



 Score = 50.4 bits (115), Expect = 5e-07
 Identities = 31/72 (43%), Positives = 40/72 (55%)
 Frame = +3

Query: 162 KKSYRTCLHCVSPEDEGQS*KPLQKQEIQAFDLRAKKTRAMRKALTKHEAKIKTRKEIRK 341
           +KS    L  VS        K  +K++    DLR K TRAMR++LTK EA  KT K+ +K
Sbjct: 59  RKSVARVLTVVSQTQRDNLRKFYRKKKYLPLDLRPKLTRAMRRSLTKKEASSKTLKQQKK 118

Query: 342 KSLFPPRVYAVK 377
            + F  R YAVK
Sbjct: 119 LAHFSLRKYAVK 130


>SB_733| Best HMM Match : DUF789 (HMM E-Value=1.3)
          Length = 356

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 276 GSSWLLNQRLVFLVFVVVSKIDLHLLVIHNVNTCDS 169
           G +WL N+R  F+VF ++   D  +L + N +T D+
Sbjct: 191 GRTWLKNKRFDFIVFYIMDSDDGLMLNLTNFSTEDT 226


>SB_49312| Best HMM Match : Mucin (HMM E-Value=0.19)
          Length = 925

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 201 EDEGQS*KPLQKQEIQAFDLRAKKTRAM-RKALTKHEAKIKTRKEIRKKSL 350
           E+EG+     +  E+Q F++  K  R M  ++LT     + T  E  KK L
Sbjct: 593 EEEGKPADEEESSEVQPFEITKKTKRGMWTQSLTNELVDVITSNEYYKKKL 643


>SB_38972| Best HMM Match : PIP5K (HMM E-Value=0)
          Length = 426

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 166 KAIARVYIVYHQKMKVNLRNHYKNKKYKPLI 258
           KA ++V +  H   K NL +H+K K+Y P++
Sbjct: 70  KAYSKVRVDNHLFNKENLPSHFKFKEYCPMV 100


>SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 726

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -3

Query: 364 TLGGKRDFFLISFLVLIFASCLVRALRIARVFLALKSKACI 242
           TL G R F       L++ S LV+  RIAR+F   KS + I
Sbjct: 511 TLCGIRRFGTGISFCLLYTSLLVKTNRIARIFSGTKSPSFI 551


>SB_45390| Best HMM Match : Glyco_transf_10 (HMM E-Value=2.5e-20)
          Length = 435

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 166 KAIARVYIVYHQKMKVNLRNHYK-NKKYKPLI*EPRRPVLCARLLLNT 306
           KA+A  Y+VY  K     + +++  +KY  +   P   +LCARL L+T
Sbjct: 326 KALAD-YLVYLDKNDTAYKEYFRWRQKYMTVHYSPWNCILCARLHLDT 372


>SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1)
          Length = 311

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 231 QKQEIQAFDLRAKKTR-AMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 371
           + +++   DL  K T  +M  +  KH AK+  R E++  S  PP V A
Sbjct: 104 ENEKLWLSDLVEKSTPCSMDNSRQKHIAKLLLRSEMKGNSELPPHVQA 151


>SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1293

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 207 EGQS*KPLQKQEIQAFDLRAKKTRAMRKALTKHEAKIKTRK 329
           E  S K ++KQ + +  + AKK    R++L K  +K+K+ K
Sbjct: 649 ESASIKHVEKQGLNSEKIVAKKKVESRESLDKKRSKVKSSK 689


>SB_21676| Best HMM Match : TrbF (HMM E-Value=0.99)
          Length = 681

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +1

Query: 154 RVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLI*EPRRPVLCARLLLNTKQRSRRGKR 333
           R++  A+  ++I  H   +     H+K +  K ++       L  +LL+N   R RR +R
Sbjct: 289 RLMALAVGALHIARHVNTRCQHELHHKWRNLKEVLVPSISRNLTNKLLMNLHVRLRRWRR 348

Query: 334 SER 342
             R
Sbjct: 349 ESR 351


>SB_17850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 201 EDEGQS*KPLQKQEIQAFDLRAKKTRAMRKALTKHEAK-IKTRKEIRKKS 347
           E E +  K  +K+E  A   R +KT   ++ALT+ ++K   +  E  KKS
Sbjct: 16  ESEEEEEKDEEKEEKPATGQRKRKTSTQKQALTRKKSKQSDSEDEDEKKS 65


>SB_22463| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1865

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = +3

Query: 132 CF*TVQDPC--CKKSYRTCLHCVSPEDEG----QS*KPLQKQEIQAFDLRAKKTR 278
           CF   Q+P   CK ++   L   S ++ G    +  K   KQ + AFD+  KKTR
Sbjct: 240 CFSVCQEPPNECKGTHDLTLLLESNDEVGPEGFEKVKTFAKQLVSAFDISDKKTR 294


>SB_3748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 166 KAIARVYIVYHQKMKVNLRNHYKNKKYKPLI*EPRRPVLCARLLLNTKQ 312
           KA+A   I  ++  +     HY  KKY+ +   P    LC+ L ++ KQ
Sbjct: 346 KALADHLIYLNRNEEAYKEYHYWRKKYRTVTLAPWTCTLCSALNIHYKQ 394


>SB_19985| Best HMM Match : WH2 (HMM E-Value=1.9)
          Length = 127

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +3

Query: 240 EIQAFDLRAKKTRAMRKALTKHEAKIKTRKE 332
           E  A D RA    A+RKA  K  AK+KT KE
Sbjct: 13  EAVASDGRASLMDAIRKAGGKKGAKLKTAKE 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,998,679
Number of Sequences: 59808
Number of extensions: 158812
Number of successful extensions: 496
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)