Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40283
(399 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14429-5|AAA28216.1| 123|Caenorhabditis elegans Ribosomal prote... 72 1e-13
Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical pr... 32 0.13
Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 32 0.13
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 32 0.13
AC006627-9|AAK85464.1| 367|Caenorhabditis elegans Hypothetical ... 30 0.70
AF036702-13|AAB88379.2| 648|Caenorhabditis elegans Hypothetical... 29 0.93
Z81588-4|CAB04713.1| 413|Caenorhabditis elegans Hypothetical pr... 27 6.5
U97404-2|AAB93309.1| 795|Caenorhabditis elegans Acid-sensing/am... 27 6.5
AL031624-1|CAA20940.1| 413|Caenorhabditis elegans Hypothetical ... 27 6.5
U23448-8|AAL27226.1| 849|Caenorhabditis elegans Dnaj domain (pr... 26 8.7
U23448-7|AAM81128.1| 868|Caenorhabditis elegans Dnaj domain (pr... 26 8.7
U23448-6|AAL27225.1| 915|Caenorhabditis elegans Dnaj domain (pr... 26 8.7
U23448-5|AAL27227.1| 912|Caenorhabditis elegans Dnaj domain (pr... 26 8.7
>L14429-5|AAA28216.1| 123|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 35 protein.
Length = 123
Score = 72.1 bits (169), Expect = 1e-13
Identities = 39/81 (48%), Positives = 46/81 (56%)
Frame = +1
Query: 13 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 192
M K+KC LR + LRV+KVTGG ASKLSKIRVVRK IAR+ V
Sbjct: 1 MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTV 60
Query: 193 YHQKMKVNLRNHYKNKKYKPL 255
+Q K LR Y + KYKP+
Sbjct: 61 INQTQKQELRKFYADHKYKPI 81
Score = 40.7 bits (91), Expect = 4e-04
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 9/59 (15%)
Frame = +3
Query: 231 QKQEIQAF---------DLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 380
QKQE++ F DLR KKTRA+R+ LT HE +++ K+ K R +AVKA
Sbjct: 65 QKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHELSLRSAKQQAKSRNQAVRKFAVKA 123
>Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical
protein M01E5.5b protein.
Length = 734
Score = 32.3 bits (70), Expect = 0.13
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 228 LQKQEIQAFDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 344
L+K + +A D K+ R +RKA+TK E KIK KE K
Sbjct: 267 LKKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 306
>Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 32.3 bits (70), Expect = 0.13
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 228 LQKQEIQAFDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 344
L+K + +A D K+ R +RKA+TK E KIK KE K
Sbjct: 339 LKKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 32.3 bits (70), Expect = 0.13
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 228 LQKQEIQAFDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 344
L+K + +A D K+ R +RKA+TK E KIK KE K
Sbjct: 339 LKKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378
>AC006627-9|AAK85464.1| 367|Caenorhabditis elegans Hypothetical
protein E01A2.7 protein.
Length = 367
Score = 29.9 bits (64), Expect = 0.70
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 279 HG-SSWLLNQRLVFLVFVVVSKIDLHLLVIHNVNT 178
HG S W+LN R V L VV SK H +VI + N+
Sbjct: 112 HGLSHWILNNRTVRLFVVVHSKTFKHSIVILDYNS 146
>AF036702-13|AAB88379.2| 648|Caenorhabditis elegans Hypothetical
protein F33D4.6b protein.
Length = 648
Score = 29.5 bits (63), Expect = 0.93
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +3
Query: 183 LHCVSPEDEGQS*KPLQKQEIQAFDLRAKKTRAMRKALTKHEAKIKTRKEIRK 341
++ + E+E KP++++E +A KK R MRK+ H+ K +KEIRK
Sbjct: 374 VNILQKENEKVEEKPVEEEE-EATTEPPKKKRKMRKS---HKTSKKEKKEIRK 422
>Z81588-4|CAB04713.1| 413|Caenorhabditis elegans Hypothetical
protein T07D10.4 protein.
Length = 413
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -2
Query: 362 SRWEERFLSDLFPRLDLCFVFSKSLAHSTGL 270
S W+ + +FPR+D C S + TG+
Sbjct: 232 SAWDYSDIDPIFPRVDYCLKMSAFNGYPTGM 262
>U97404-2|AAB93309.1| 795|Caenorhabditis elegans
Acid-sensing/amiloride-sensitiveion channel family
protein 1 protein.
Length = 795
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 392 IIYSSFNGIDSRWEERFLSDLFPRLDLCFVFSKSLAHST 276
I+ SFNG + + F+ L P CF + + L ++T
Sbjct: 463 IMKCSFNGRECNVKHDFVEYLDPTYGACFTYGQKLGNNT 501
>AL031624-1|CAA20940.1| 413|Caenorhabditis elegans Hypothetical
protein H16D19.1 protein.
Length = 413
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -2
Query: 362 SRWEERFLSDLFPRLDLCFVFSKSLAHSTGL 270
S W+ + +FPR+D C S + TG+
Sbjct: 232 SAWDYSDIDPIFPRVDYCLKMSAFNGYPTGM 262
>U23448-8|AAL27226.1| 849|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform b
protein.
Length = 849
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 228 LQKQEIQAFDLRAKKTRAMRKALTKHEAKIKTRKEI 335
LQ++E+ + DL+ ++A+R H KTR I
Sbjct: 356 LQRKELSSADLKLNDSKAVRTKNNDHRETGKTRNTI 391
>U23448-7|AAM81128.1| 868|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform d
protein.
Length = 868
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 228 LQKQEIQAFDLRAKKTRAMRKALTKHEAKIKTRKEI 335
LQ++E+ + DL+ ++A+R H KTR I
Sbjct: 356 LQRKELSSADLKLNDSKAVRTKNNDHRETGKTRNTI 391
>U23448-6|AAL27225.1| 915|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform a
protein.
Length = 915
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 228 LQKQEIQAFDLRAKKTRAMRKALTKHEAKIKTRKEI 335
LQ++E+ + DL+ ++A+R H KTR I
Sbjct: 356 LQRKELSSADLKLNDSKAVRTKNNDHRETGKTRNTI 391
>U23448-5|AAL27227.1| 912|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform c
protein.
Length = 912
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 228 LQKQEIQAFDLRAKKTRAMRKALTKHEAKIKTRKEI 335
LQ++E+ + DL+ ++A+R H KTR I
Sbjct: 355 LQRKELSSADLKLNDSKAVRTKNNDHRETGKTRNTI 390
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,429,354
Number of Sequences: 27780
Number of extensions: 118753
Number of successful extensions: 459
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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