Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40283
(399 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) vari... 75 1e-14
At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) vari... 75 1e-14
At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D) ribo... 74 3e-14
At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B) 74 3e-14
At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) simi... 74 4e-14
At4g14350.2 68417.m02211 protein kinase family protein contains ... 27 3.5
At4g14350.1 68417.m02210 protein kinase family protein contains ... 27 3.5
At1g63490.1 68414.m07179 transcription factor jumonji (jmjC) dom... 27 4.6
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME... 27 6.1
At2g22720.3 68415.m02692 expressed protein 27 6.1
At2g22720.2 68415.m02691 expressed protein 27 6.1
>At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 75.4 bits (177), Expect = 1e-14
Identities = 46/110 (41%), Positives = 59/110 (53%)
Frame = +1
Query: 13 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 192
M ++K ELR K +LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 193 YHQKMKVNLRNHYKNKKYKPLI*EPRRPVLCARLLLNTKQRSRRGKRSER 342
QK K LR YKNKK PL P++ R L Q S + +R ++
Sbjct: 61 SSQKQKSALREAYKNKKLLPLDLRPKK-TRAIRRRLTKHQASLKTEREKK 109
Score = 56.4 bits (130), Expect = 7e-09
Identities = 28/72 (38%), Positives = 43/72 (59%)
Frame = +3
Query: 162 KKSYRTCLHCVSPEDEGQS*KPLQKQEIQAFDLRAKKTRAMRKALTKHEAKIKTRKEIRK 341
+KS L S + + + + +++ DLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51 RKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110
Query: 342 KSLFPPRVYAVK 377
FP R YA+K
Sbjct: 111 DMYFPIRKYAIK 122
>At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 75.4 bits (177), Expect = 1e-14
Identities = 46/110 (41%), Positives = 59/110 (53%)
Frame = +1
Query: 13 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 192
M ++K ELR K +LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 193 YHQKMKVNLRNHYKNKKYKPLI*EPRRPVLCARLLLNTKQRSRRGKRSER 342
QK K LR YKNKK PL P++ R L Q S + +R ++
Sbjct: 61 SSQKQKSALREAYKNKKLLPLDLRPKK-TRAIRRRLTKHQASLKTEREKK 109
Score = 56.4 bits (130), Expect = 7e-09
Identities = 28/72 (38%), Positives = 43/72 (59%)
Frame = +3
Query: 162 KKSYRTCLHCVSPEDEGQS*KPLQKQEIQAFDLRAKKTRAMRKALTKHEAKIKTRKEIRK 341
+KS L S + + + + +++ DLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51 RKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110
Query: 342 KSLFPPRVYAVK 377
FP R YA+K
Sbjct: 111 DMYFPIRKYAIK 122
>At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D)
ribosomal protein L35- cytosolic, Arabidopsis thaliana,
PIR:T00549
Length = 123
Score = 74.1 bits (174), Expect = 3e-14
Identities = 46/110 (41%), Positives = 58/110 (52%)
Frame = +1
Query: 13 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 192
M ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 193 YHQKMKVNLRNHYKNKKYKPLI*EPRRPVLCARLLLNTKQRSRRGKRSER 342
QK K LR YKNKK PL P++ R L Q S + +R ++
Sbjct: 61 ISQKQKSALREAYKNKKLLPLDLRPKK-TRAIRRRLTKHQASLKTEREKK 109
Score = 59.7 bits (138), Expect = 7e-10
Identities = 28/72 (38%), Positives = 45/72 (62%)
Frame = +3
Query: 162 KKSYRTCLHCVSPEDEGQS*KPLQKQEIQAFDLRAKKTRAMRKALTKHEAKIKTRKEIRK 341
+KS L +S + + + + +++ DLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51 RKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110
Query: 342 KSLFPPRVYAVK 377
+ FP R YA+K
Sbjct: 111 EMYFPVRKYAIK 122
>At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B)
Length = 123
Score = 74.1 bits (174), Expect = 3e-14
Identities = 46/110 (41%), Positives = 58/110 (52%)
Frame = +1
Query: 13 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 192
M ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 193 YHQKMKVNLRNHYKNKKYKPLI*EPRRPVLCARLLLNTKQRSRRGKRSER 342
QK K LR YKNKK PL P++ R L Q S + +R ++
Sbjct: 61 ISQKQKSALREAYKNKKLLPLDLRPKK-TRAIRRRLTKHQASLKTEREKK 109
Score = 59.3 bits (137), Expect = 9e-10
Identities = 28/72 (38%), Positives = 45/72 (62%)
Frame = +3
Query: 162 KKSYRTCLHCVSPEDEGQS*KPLQKQEIQAFDLRAKKTRAMRKALTKHEAKIKTRKEIRK 341
+KS L +S + + + + +++ DLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51 RKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110
Query: 342 KSLFPPRVYAVK 377
+ FP R YA+K
Sbjct: 111 EMYFPIRKYAIK 122
>At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) similar
to 60S ribosomal protein L35 GB:AAC27830
Length = 123
Score = 73.7 bits (173), Expect = 4e-14
Identities = 46/110 (41%), Positives = 58/110 (52%)
Frame = +1
Query: 13 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 192
M ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 193 YHQKMKVNLRNHYKNKKYKPLI*EPRRPVLCARLLLNTKQRSRRGKRSER 342
QK K LR YKNKK PL P++ R L Q S + +R ++
Sbjct: 61 SSQKQKSALREAYKNKKLLPLDLRPKK-TRAIRRRLTKHQASLKTEREKK 109
Score = 57.2 bits (132), Expect = 4e-09
Identities = 28/72 (38%), Positives = 44/72 (61%)
Frame = +3
Query: 162 KKSYRTCLHCVSPEDEGQS*KPLQKQEIQAFDLRAKKTRAMRKALTKHEAKIKTRKEIRK 341
+KS L S + + + + +++ DLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51 RKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110
Query: 342 KSLFPPRVYAVK 377
+ FP R YA+K
Sbjct: 111 EMYFPIRKYAIK 122
>At4g14350.2 68417.m02211 protein kinase family protein contains
similarity to Swiss-Prot:O13310 serine/threonine-protein
kinase orb6 [Schizosaccharomyces pombe]
Length = 551
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 97 TNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKK 243
+N++ T G LS I + A A++YI H KM++ K ++
Sbjct: 27 SNVKEGPKTAGGEEALSNITKEKAAAAKLYIENHYKMQMQSLQERKERR 75
>At4g14350.1 68417.m02210 protein kinase family protein contains
similarity to Swiss-Prot:O13310 serine/threonine-protein
kinase orb6 [Schizosaccharomyces pombe]
Length = 551
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 97 TNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKK 243
+N++ T G LS I + A A++YI H KM++ K ++
Sbjct: 27 SNVKEGPKTAGGEEALSNITKEKAAAAKLYIENHYKMQMQSLQERKERR 75
>At1g63490.1 68414.m07179 transcription factor jumonji (jmjC)
domain-containing protein similar to PLU-1 protein
(GI:4902724) [Homo sapiens] and PLU1 (GI:22726257) [Mus
musculus]; similar to Retinoblastoma-binding protein 2
(RBBP-2) (SP:P29375) {Homo sapiens}; contains Pfam
PF02373: jmjC domain
Length = 1116
Score = 27.1 bits (57), Expect = 4.6
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +3
Query: 165 KSYRTCLHCVSPEDEGQS*KPLQKQEIQAFDLRAKKTRAMRKALTKHEAKIKTRKEIRKK 344
K+Y C C + P + E + L ++TR + ++ K KTRK I++
Sbjct: 1043 KAY-VCSACCPLAETTPQIDPARATEPERPSLNQRRTRMVATDAAVNDLKWKTRKHIKRT 1101
Query: 345 SLFPPRVY 368
+ P+V+
Sbjct: 1102 TKRSPQVH 1109
>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
protein [Arabidopsis thaliana] GI:21743571; contains
Pfam profile PF00730: HhH-GPD superfamily base excision
DNA repair protein
Length = 1729
Score = 26.6 bits (56), Expect = 6.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 222 KPLQKQEIQAFDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSL 350
KP + E+ + K R RKA T+ + K K +KK+L
Sbjct: 59 KPRKPAELPKVVVEGKPKRKPRKAATQEKVKSKETGSAKKKNL 101
>At2g22720.3 68415.m02692 expressed protein
Length = 569
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +3
Query: 201 EDEGQS*KPLQKQEIQAFDLRAKKTRAMRKALTKHEAKIKTRKEIRKK 344
EDE + + K+E++ + R K ++RK + A ++ +E R+K
Sbjct: 26 EDEEEEDEEPPKEELEFLESRQKLKESIRKKMGNGSANAQSSQERRRK 73
>At2g22720.2 68415.m02691 expressed protein
Length = 672
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +3
Query: 201 EDEGQS*KPLQKQEIQAFDLRAKKTRAMRKALTKHEAKIKTRKEIRKK 344
EDE + + K+E++ + R K ++RK + A ++ +E R+K
Sbjct: 129 EDEEEEDEEPPKEELEFLESRQKLKESIRKKMGNGSANAQSSQERRRK 176
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,000,852
Number of Sequences: 28952
Number of extensions: 110955
Number of successful extensions: 325
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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