Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40280
(623 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 126 3e-30
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 126 3e-30
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 99 6e-22
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 77 2e-15
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 35 0.008
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe... 27 2.9
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 26 3.8
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 26 5.1
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 25 6.7
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 6.7
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 25 8.9
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 8.9
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 126 bits (303), Expect = 3e-30
Identities = 56/85 (65%), Positives = 67/85 (78%)
Frame = +2
Query: 2 KTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAK 181
K RAR + +++ +DVT+ARKIWCFGP+ TG N++VD +K V YLNEIKDSVVA F WA+K
Sbjct: 613 KVRARIMADEFGWDVTDARKIWCFGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASK 672
Query: 182 EGVMAEENLRGVRFNIYDVTLHTDA 256
EG M EENLR RFNI DV LH DA
Sbjct: 673 EGPMFEENLRSCRFNILDVVLHADA 697
Score = 125 bits (302), Expect = 5e-30
Identities = 57/84 (67%), Positives = 66/84 (78%)
Frame = +1
Query: 256 IHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEE 435
IHRGGGQIIPT RR +YA L A P + EPV+L EIQ E A+GGIY VLN++RGHVF E
Sbjct: 698 IHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSE 757
Query: 436 SQVAGTPMFIVKAYLPVNESFGFT 507
Q GTP++ +KAYLPVNESFGFT
Sbjct: 758 EQRVGTPLYNIKAYLPVNESFGFT 781
Score = 53.6 bits (123), Expect = 2e-08
Identities = 22/36 (61%), Positives = 25/36 (69%)
Frame = +3
Query: 501 FYCDLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKP 608
F +LR T GQAFPQ VFDHW + GDP +P SKP
Sbjct: 780 FTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKP 815
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 126 bits (303), Expect = 3e-30
Identities = 56/85 (65%), Positives = 67/85 (78%)
Frame = +2
Query: 2 KTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAK 181
K RAR + +++ +DVT+ARKIWCFGP+ TG N++VD +K V YLNEIKDSVVA F WA+K
Sbjct: 613 KVRARIMADEFGWDVTDARKIWCFGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASK 672
Query: 182 EGVMAEENLRGVRFNIYDVTLHTDA 256
EG M EENLR RFNI DV LH DA
Sbjct: 673 EGPMFEENLRSCRFNILDVVLHADA 697
Score = 125 bits (302), Expect = 5e-30
Identities = 57/84 (67%), Positives = 66/84 (78%)
Frame = +1
Query: 256 IHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEE 435
IHRGGGQIIPT RR +YA L A P + EPV+L EIQ E A+GGIY VLN++RGHVF E
Sbjct: 698 IHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSE 757
Query: 436 SQVAGTPMFIVKAYLPVNESFGFT 507
Q GTP++ +KAYLPVNESFGFT
Sbjct: 758 EQRVGTPLYNIKAYLPVNESFGFT 781
Score = 53.6 bits (123), Expect = 2e-08
Identities = 22/36 (61%), Positives = 25/36 (69%)
Frame = +3
Query: 501 FYCDLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKP 608
F +LR T GQAFPQ VFDHW + GDP +P SKP
Sbjct: 780 FTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKP 815
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 98.7 bits (235), Expect = 6e-22
Identities = 44/83 (53%), Positives = 60/83 (72%)
Frame = +1
Query: 256 IHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEE 435
I+RGGGQIIPT RR Y+ LTA PRLMEPVY+ E+ P ++ IY +L RRRGHV ++
Sbjct: 814 IYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQD 873
Query: 436 SQVAGTPMFIVKAYLPVNESFGF 504
G+P+++V+A +PV +S GF
Sbjct: 874 IPRPGSPLYLVRALIPVIDSCGF 896
Score = 68.1 bits (159), Expect = 1e-12
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Frame = +2
Query: 2 KTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQ 169
K + + + Y++D+ +R IW FGP+ G NIL D + LN +K+ + GFQ
Sbjct: 725 KRISEFFQKNYDWDLLASRSIWAFGPDDRGTNILRDDTLSTDVDKNVLNSVKEYIKQGFQ 784
Query: 170 WAAKEGVMAEENLRGVRFNIYDVTL 244
W +EG + +E +R V F + DV L
Sbjct: 785 WGTREGPLCDETIRNVNFRLMDVVL 809
Score = 52.0 bits (119), Expect = 7e-08
Identities = 23/39 (58%), Positives = 26/39 (66%)
Frame = +3
Query: 501 FYCDLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPTTL 617
F DLR +T GQA Q VFDHWQV+PGDP + KP L
Sbjct: 896 FETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSIKPKPL 934
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 77.0 bits (181), Expect = 2e-15
Identities = 35/78 (44%), Positives = 48/78 (61%)
Frame = +1
Query: 271 GQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAG 450
GQ+I + + L PRLM +Y C++Q +G +YGV+++RRG V +E G
Sbjct: 841 GQVISVVKESIRHGFLGWSPRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEG 900
Query: 451 TPMFIVKAYLPVNESFGF 504
TP FIVKA +PV ESFGF
Sbjct: 901 TPFFIVKALIPVVESFGF 918
Score = 29.9 bits (64), Expect = 0.31
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Frame = +2
Query: 62 IWCFGPEGTGPNILVDCSKGVQYL-----------NEIKDSVVAGFQWAAKEGVMAEENL 208
I FGP+ GPNIL D +K ++ +++ + VV FQ +G + E +
Sbjct: 751 IIAFGPKRVGPNILFDKTKKMRDFRRQSDETKLIPSDLSEYVVTAFQLITHQGPLCAEPV 810
Query: 209 RGVRFNIYDVTLHTDA 256
+G+ +I + D+
Sbjct: 811 QGICVSIDQFDISDDS 826
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 35.1 bits (77), Expect = 0.008
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +1
Query: 316 LTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNES 495
L A P ++EP+ I P GG+ G L++R+ + + F ++A +P+N
Sbjct: 668 LQANPMVLEPIMNVSITAPVEHQGGVIGNLDKRKATIVDSD--TDEDEFTLQAEVPLNSM 725
Query: 496 FGFTA 510
F +++
Sbjct: 726 FSYSS 730
>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 82 LGAKAPNLTGFGNIVFVLFCKIPSAS 5
+G PNL GN +F L ++PS+S
Sbjct: 169 IGILPPNLNSIGNKMFSLKSRVPSSS 194
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 24 QKSTNTMLPKPVRFGALAPRVPAPTSWSIAPKEFSTSMKLRTLLWLDSS 170
++ T T L + GA P +P T WS+A T TL W+ ++
Sbjct: 140 ERKTLTHLRRISLQGADDPEIP--TDWSVAMSPPETEQDASTLFWVPAN 186
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 50 EARKIWCFGPEGTGPNILVD--CSKGVQYLNE 139
E + GP G+G ++LVD S+ Q +NE
Sbjct: 574 EGNSVIIVGPRGSGKSVLVDDILSRAAQEINE 605
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +1
Query: 280 IPTTRRCLYACLLTAQPRLMEPVYL-CEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTP 456
IP T RC+ + + + P+L P L + CP + + V+ H F + P
Sbjct: 386 IPNTERCILSAFICSPPQLPLPNPLRMYLPCPSLNSTEV-SVITLAPQHSFLNIVINLNP 444
Query: 457 MFIVKAY 477
+K+Y
Sbjct: 445 ALALKSY 451
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 128 YLNEIKDSVVAGFQWAAKEGVMAEENLRGVR 220
YL+ + +AGFQ G+ ++N +GVR
Sbjct: 248 YLSPVVRRYLAGFQSGFLHGLKTKDNSKGVR 278
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.0 bits (52), Expect = 8.9
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +2
Query: 128 YLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDASIEVVAKSFQQLEDA 301
YLN + + FQ+ EGV+ L V NI+ L + V A + Q +E +
Sbjct: 6 YLNHVIRGIYNDFQFLVDEGVVERSALDWVHANIH---LQDGPASPVTAPAAQPVESS 60
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 8.9
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 26 EKY-EYDVTEARKIWCFGPEGTGPNIL 103
EK+ + VT ++ + FGP GTG +L
Sbjct: 521 EKFLRFGVTPSKGVLFFGPPGTGKTLL 547
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,435
Number of Sequences: 5004
Number of extensions: 64089
Number of successful extensions: 175
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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