Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40280
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   153   8e-38
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)             105   4e-23
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)                  73   1e-13
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)                 57   1e-08
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_46856| Best HMM Match : LRR_1 (HMM E-Value=0.00021)                 29   4.1  
SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  153 bits (372), Expect = 8e-38
 Identities = 72/85 (84%), Positives = 75/85 (88%)
 Frame = +1

Query: 256 IHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEE 435
           IHRGGGQIIPT RR LYAC+LTA+P L+EPVY  EIQCPE AVGGIYGVLNRRRG V EE
Sbjct: 689 IHRGGGQIIPTARRVLYACMLTAKPCLLEPVYSVEIQCPESAVGGIYGVLNRRRGQVLEE 748

Query: 436 SQVAGTPMFIVKAYLPVNESFGFTA 510
           S VAGTPMFIVKAYLPV ESFGFTA
Sbjct: 749 SNVAGTPMFIVKAYLPVMESFGFTA 773



 Score =  150 bits (363), Expect = 1e-36
 Identities = 67/85 (78%), Positives = 74/85 (87%)
 Frame = +2

Query: 2   KTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAK 181
           K RARYL + Y +DV EARKIW FGPEGTGPN+LVD SKGVQYLNEIKDSVVAGFQWA K
Sbjct: 604 KIRARYLADTYGWDVNEARKIWSFGPEGTGPNLLVDVSKGVQYLNEIKDSVVAGFQWATK 663

Query: 182 EGVMAEENLRGVRFNIYDVTLHTDA 256
           EG + +EN+RGVRFNI+DVTLH DA
Sbjct: 664 EGPLCDENVRGVRFNIHDVTLHADA 688



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 27/36 (75%), Positives = 28/36 (77%)
 Frame = +3

Query: 501 FYCDLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKP 608
           F  DLRS TGGQAFPQCVFDHWQVLPGD  +  S P
Sbjct: 771 FTADLRSKTGGQAFPQCVFDHWQVLPGDVHDLASMP 806


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score =  105 bits (251), Expect = 4e-23
 Identities = 45/83 (54%), Positives = 59/83 (71%)
 Frame = +1

Query: 256 IHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEE 435
           IHRGGGQIIPT RR  Y+  L A PRLMEP +  E+Q P   V  +Y VL RRRGHV ++
Sbjct: 669 IHRGGGQIIPTARRVAYSAFLMATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQD 728

Query: 436 SQVAGTPMFIVKAYLPVNESFGF 504
           + V G+P++ +KA++P  +SFGF
Sbjct: 729 APVPGSPLYTIKAFIPAIDSFGF 751



 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 38/85 (44%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
 Frame = +2

Query: 2   KTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVD----CSKGVQYLNEIKDSVVAGFQ 169
           K    +   KY++D+  AR IW FGPE TGPNILVD           LN +KDS++ GFQ
Sbjct: 580 KKLGEFFQTKYDWDLLAARSIWAFGPENTGPNILVDDTLPSEVDKSLLNTVKDSIIQGFQ 639

Query: 170 WAAKEGVMAEENLRGVRFNIYDVTL 244
           WA +EG + +E +R V+F I D  +
Sbjct: 640 WATREGPLCDEPIRNVKFKILDAVI 664



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = +3

Query: 501 FYCDLRSNTGGQAFPQCVFDHWQVLPGDPCE 593
           F  DLR++T GQAF   VF HWQ++PGDP +
Sbjct: 751 FETDLRTHTQGQAFCLSVFHHWQIVPGDPLD 781


>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
          Length = 119

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 30/61 (49%), Positives = 43/61 (70%)
 Frame = +1

Query: 322 AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 501
           A PRLMEP +  E+Q P   V  +Y VL RRRGHV +++ V G+P++ +KA++P  +SFG
Sbjct: 1   ATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFG 60

Query: 502 F 504
           F
Sbjct: 61  F 61



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = +3

Query: 501 FYCDLRSNTGGQAFPQCVFDHWQVLPGDPCE 593
           F  DLR++T GQAF   VF HWQ++PGDP +
Sbjct: 61  FETDLRTHTQGQAFCLSVFHHWQIVPGDPLD 91


>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
          Length = 549

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
 Frame = +1

Query: 325 QP-RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 501
           QP RLM  +Y C IQ     +G +Y V+ RR G V  E    G+ +F V+A LPV ESFG
Sbjct: 407 QPMRLMAAMYTCHIQATAEVLGRMYAVIARREGRVLSEEMKEGSDVFDVEAVLPVAESFG 466

Query: 502 FT 507
           F+
Sbjct: 467 FS 468



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 17/86 (19%)
 Frame = +2

Query: 53  ARKIWCFGPEGTGPNILVDCSKGV------QYLNE-----------IKDSVVAGFQWAAK 181
           A  IW FGP GTGPNIL++           Q L+E              S+V+GFQ    
Sbjct: 179 ADHIWAFGPRGTGPNILLNRDPDYPRPSIWQCLDENAGYKAGEYKPYDSSIVSGFQMTTL 238

Query: 182 EGVMAEENLRGVRFNIYDVTLHTDAS 259
            G +  E L GV F+I  + L+T  S
Sbjct: 239 SGPLCAEPLMGVCFSIEHLVLNTGQS 264



 Score = 31.5 bits (68), Expect = 0.57
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 510 DLRSNTGGQAFPQCVFDHWQVLPGDP 587
           ++R  T G A PQ +F HW+ +  DP
Sbjct: 470 EIRKRTSGLANPQLMFSHWEAIDLDP 495


>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1117

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 256 IHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYL 354
           + R   +I+PT RR  +  LLT+     +PVY+
Sbjct: 538 VRRSLQEIVPTQRRKAFVALLTSTVNAKQPVYI 570


>SB_46856| Best HMM Match : LRR_1 (HMM E-Value=0.00021)
          Length = 923

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +2

Query: 248 TDASIEVVAKSFQQLEDACMHVC*LLSPVS 337
           TDAS++V+AKS  QLE   M  C  L+ +S
Sbjct: 261 TDASVKVLAKSCSQLEHVYMVDCPRLTDLS 290


>SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1153

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 333 TGLSS*QTCIQASSSCWNDLATTSMDASVW 244
           +G SS   C+Q+SS    D+AT  +  S+W
Sbjct: 351 SGKSSLSMCVQSSSMSVADVATEGVHVSLW 380


>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1506

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 15   GILQKSTNTMLPKPVRFGALAPRVPA 92
            GI++ ST  ++P P+R   + P VPA
Sbjct: 1118 GIVRASTRKVVPSPLRRSKVPPTVPA 1143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,597,574
Number of Sequences: 59808
Number of extensions: 529887
Number of successful extensions: 1411
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)