Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40280
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    30   0.016
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.6  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   7.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   7.4  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 30.3 bits (65), Expect = 0.016
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
 Frame = +2

Query: 74  GPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEG-----VMAEENLRGVRFNIYDV 238
           GP   GP+ ++D + GV Y  +I  + +A +    +       ++AE N   V  N   +
Sbjct: 294 GPNSQGPSSVIDTNTGVDYFTQINRNGIACWDTNTELNPNTFILVAENNTTMVFCNDLSI 353

Query: 239 TLHTDASIEVVAKSFQQL 292
              T+ ++ V++ +FQQL
Sbjct: 354 DRSTN-TMYVLSDNFQQL 370


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 102 RMLGPVPSGPKHQILRASVTSYSYFSVRY 16
           R   P+P  P H +L A+V   S +  RY
Sbjct: 76  RFRKPLPIEPWHGVLNATVLPNSCYQERY 104


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 102 RMLGPVPSGPKHQILRASVTSYSYFSVRY 16
           R   P+P  P H +L A+V   S +  RY
Sbjct: 76  RFRKPLPIEPWHGVLNATVLPNSCYQERY 104


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 122 VQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDV 238
           ++  N  K +++ GF   A + +  E N +GV    Y+V
Sbjct: 524 IELANTFK-AIIYGFNVNATKQIKDEANKKGVSLRFYNV 561


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 97  VGAGTLGAKAPNLTGFGNIVFV 32
           V AG +GA+ P+   +GN V V
Sbjct: 903 VTAGVIGARKPHYDIWGNTVNV 924


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 379 AVGGIYGVLNRRR 417
           A GGIY + N+RR
Sbjct: 317 AEGGIYDISNKRR 329


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = +2

Query: 167 QWAAKEGVMAEENLRGVRFNIYDVTLHTDASIEVVAKSF 283
           +W+ K  +    ++ G  F++ ++ L  DAS  +  ++F
Sbjct: 156 KWSRKGFLRTRWSISGTVFDLINIHLFHDASNFIAMETF 194


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,613
Number of Sequences: 438
Number of extensions: 4440
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)