Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40278
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.13 |skb5||Shk1 kinase binding protein 5|Schizosaccharo...    33   0.024
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.074
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    32   0.074
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    30   0.23 
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    29   0.40 
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    29   0.69 
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    28   0.91 
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    27   2.1  
SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy...    26   4.9  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    25   6.4  
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    25   8.5  

>SPCC24B10.13 |skb5||Shk1 kinase binding protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 33.5 bits (73), Expect = 0.024
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 317 VVLHDFTPCVDDELEVKRGQIVNVLYREND-WVYVIVAESRREGFIPHSY 463
           V L+DF P  D+EL    GQ + +L   +D W+      S R G +P ++
Sbjct: 86  VALYDFEPLHDNELGFTTGQRLCILSESSDGWLIAYDDASGRSGLVPETF 135


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.9 bits (69), Expect = 0.074
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +2

Query: 308 SKMVVLHDFTPCVDDELEVKRGQIVNVLYR-ENDW---VYVIVAESRREGFIPHSYCAPC 475
           +++V L+ +     D+LE   GQ+++V+   + DW    YV    +R+ G  P  +  P 
Sbjct: 6   TRVVALYPYRSSFSDDLEFDPGQVIDVVSNLDGDWYTGTYVDSDGNRKIGSFPKDFTEPA 65

Query: 476 E 478
           E
Sbjct: 66  E 66


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 31.9 bits (69), Expect = 0.074
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +2

Query: 296 LSPDSKMV-VLHDFTPCVDDELEVKRGQIVNVLYREND--WVYVIVAESRREGFIPHSY 463
           + P  K++  L+D+T     E+   +G   +V+ REND  W  V    +   GF+P S+
Sbjct: 22  IEPPRKVIRALYDYTARKATEVSFAKGDFFHVIGRENDKAWYEVCNPAAGTRGFVPVSH 80



 Score = 28.3 bits (60), Expect = 0.91
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +2

Query: 269 RVGIEKEHGLSPDSKMVVLHDFTPCVDDELEVKRGQIVNVLYREN-DW-VYVIVAESRRE 442
           R  I + H  S     +V  DF     DELE K G+ + ++ R N +W V   +      
Sbjct: 113 RSSISELHSGSQPLFGIVQFDFAAERPDELEAKAGEAIIIIARSNHEWLVAKPIGRLGGP 172

Query: 443 GFIPHSY 463
           G IP S+
Sbjct: 173 GLIPLSF 179


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 302 PDSKMVVLHDFTPCVDDELEVKRGQIVNVLYRENDWVYVIVAESRREGFIPHSY 463
           P +KM  L+D+T    DE+  +  Q ++  Y + D  +++V  +   G  P +Y
Sbjct: 81  PSTKMKALYDYTQQSVDEISFQADQTLD-CYGDTDSDWILVGFNNNFGLAPRNY 133


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
 Frame = +2

Query: 326 HDFTPCVDDELEVKRGQIVNVLYR--ENDWVYVIVAE----SRREGFIPHSYCAPCEHHD 487
           + F P  ++EL++K+G ++ VL    E  WV   + E    +   G  P +YC P    D
Sbjct: 430 YSFEPETENELKLKKGDLLLVLKEIDEGWWVGEKLGEDGVFTGNTGMFPSNYCVPAHPWD 489


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 12/59 (20%), Positives = 31/59 (52%)
 Frame = +2

Query: 287 EHGLSPDSKMVVLHDFTPCVDDELEVKRGQIVNVLYRENDWVYVIVAESRREGFIPHSY 463
           EH     +  +V++D++P  ++E+E+   + + +L   +D  ++      ++G  P +Y
Sbjct: 721 EHTQPTKTPAIVIYDYSPEEENEIELVENEQIQILEFVDDGWWLGENSKGQQGLFPSNY 779


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +2

Query: 260 TLVRVGIEKEHGLSPDSKM--VVLHDFTPCVDDELEVKRGQIVNVLYRENDWVYVIVAES 433
           +L  V  E+     P SK+  VVL+DFT   +  +    GQ   +L  ++   +V V   
Sbjct: 500 SLSNVKTEETTPAEPASKVDGVVLYDFTGEHEGVITASEGQEFTLLEPDDGSGWVRVKID 559

Query: 434 RREGFIPHSY 463
             +G IP SY
Sbjct: 560 GTDGLIPASY 569


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 366 FTSNSSSTHGVKSWSTTIF 310
           FT +  S HG K W TT++
Sbjct: 52  FTPSRQSLHGTKDWVTTVY 70


>SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 79  KRFLLKIPPFSNLHFQKLRPFTSK 8
           KRFLLKI  FS     KL+   SK
Sbjct: 50  KRFLLKIKGFSEAKVDKLKEAASK 73


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 352 VIHTWCEIMEHHHLRIRTEAMFLLN 278
           +I  + E+  H + +IRT+A+F LN
Sbjct: 179 MIPRFIELARHENPKIRTDALFCLN 203


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 106 RHCKTWHFYVQSGSEGERRRNRVLETLIKTSPGPV 210
           R C  W+  V+  ++  RR +   E      PGPV
Sbjct: 206 RSCTKWNVMVKDVADLPRRIDEAFEIATSGRPGPV 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,940
Number of Sequences: 5004
Number of extensions: 53351
Number of successful extensions: 115
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)