Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40278
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874...    34   0.075
04_03_0215 + 12722394-12722581,12722992-12723071,12723315-127235...    29   2.8  
09_04_0180 + 15367737-15367755,15368874-15369739                       29   3.7  

>03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,
            8746665-8746893,8747314-8747420,8747560-8747622,
            8747883-8747983,8748996-8749090,8749330-8749350,
            8749987-8750082,8750188-8750308,8750415-8750570,
            8750679-8750869,8751207-8751478,8751853-8751954,
            8752006-8752038,8752132-8752308,8752397-8752466,
            8752512-8752585,8752667-8752908,8752983-8753129,
            8753526-8753751,8753893-8753970,8754378-8754521,
            8754829-8755008,8755335-8755394,8755484-8755523,
            8758653-8759137
          Length = 1294

 Score = 34.3 bits (75), Expect = 0.075
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 323  LHDFTPCVDDELEVKRGQIVNVLYRENDWVYVIVAESRREG 445
            L+DFT   DDEL +  G+ V + Y  + W YV      R+G
Sbjct: 1090 LYDFTAGGDDELSLTAGEDVEIEYEVDGWYYVKKKRPGRDG 1130


>04_03_0215 +
           12722394-12722581,12722992-12723071,12723315-12723532,
           12724084-12724168,12724679-12724725,12725378-12725536
          Length = 258

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -1

Query: 549 IVKHLYGLNGWGSTLGSFFFKS*CSHGAQYEC 454
           I++H Y +NG  STLG FF K     GA   C
Sbjct: 182 IMRHWYFVNGMLSTLGKFFVKG-VEQGAATVC 212


>09_04_0180 + 15367737-15367755,15368874-15369739
          Length = 294

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 247 DPVMRPIPGLSPELGLERSLSESPELDFFFFPL 149
           DP + P+P L PE  +E  L    EL+    P+
Sbjct: 49  DPALEPLPDLDPEPEVEAELEAELELELLVPPI 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,663,730
Number of Sequences: 37544
Number of extensions: 341686
Number of successful extensions: 747
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)