Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40278
(603 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26) 75 3e-14
SB_41947| Best HMM Match : SH3_1 (HMM E-Value=6.3e-24) 58 5e-09
SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 6e-07
SB_39120| Best HMM Match : SH3_1 (HMM E-Value=2e-20) 38 0.005
SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23) 37 0.014
SB_33663| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_4655| Best HMM Match : Spectrin (HMM E-Value=0) 36 0.025
SB_49450| Best HMM Match : SH3_1 (HMM E-Value=6.9e-17) 35 0.058
SB_38286| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.058
SB_33662| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.077
SB_33664| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_59147| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_10519| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.31
SB_3027| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_18821| Best HMM Match : SH3_1 (HMM E-Value=5.7e-16) 32 0.41
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_54886| Best HMM Match : SH3_2 (HMM E-Value=3.2e-24) 31 0.72
SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38) 31 0.72
SB_37686| Best HMM Match : DUF1011 (HMM E-Value=10) 30 1.3
SB_50467| Best HMM Match : SH3_1 (HMM E-Value=1e-12) 30 1.3
SB_57028| Best HMM Match : PCNA_C (HMM E-Value=8.9) 30 1.7
SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17) 29 2.2
SB_41533| Best HMM Match : SH2 (HMM E-Value=6.3e-25) 29 2.2
SB_58990| Best HMM Match : SH3_1 (HMM E-Value=1.7e-14) 29 3.8
SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2) 28 6.7
SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
Length = 2157
Score = 75.4 bits (177), Expect = 3e-14
Identities = 47/101 (46%), Positives = 61/101 (60%), Gaps = 7/101 (6%)
Frame = +2
Query: 227 NG-PHHRI---SKLETLVRVGIEKEHGLSPDS--KMVVLHDFTPCVDDELEVKRGQIVNV 388
NG P +RI S L++LV + +++ D KMVV HDF PCVDDEL VKRG+ V +
Sbjct: 1760 NGAPKNRITGSSSLDSLVGIVKQEDEDYFADDPKKMVVTHDFIPCVDDELAVKRGERVLM 1819
Query: 389 LYRENDWVYVIVAESRREGFIPHSYC-APCEHHDLKKKLPR 508
LYR+N+W Y I EGFIP + C A E+ + KL R
Sbjct: 1820 LYRQNNW-YYIKNSRNTEGFIPFTNCIAEDEYEKRQNKLSR 1859
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 317 VVLHDFTPCVDDELEVKRGQIVNVLYREN-DWVYVIVAESRREGFIPHSYCAPCEHHDLK 493
V L DF +D++ +G +V VL +++ DW Y +V S EGFIP + P + +K
Sbjct: 1894 VALWDFNATAEDDITASKGDVVTVLNKDDPDW-YWVVKRSGDEGFIPKEFIIPADQLSVK 1952
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +2
Query: 314 MVVLHDFTPCVDDELEVKRGQIVNVLYREND---WVYVIVAESRREGFIPHSYCAP 472
+V +T D+EL V +G V ++ D W++ S ++G++P + P
Sbjct: 2096 LVCTDTYTAQQDNELTVFKGDWVYADMQQRDARGWIWAYSPASHKQGYVPRACLRP 2151
>SB_41947| Best HMM Match : SH3_1 (HMM E-Value=6.3e-24)
Length = 581
Score = 58.0 bits (134), Expect = 5e-09
Identities = 27/50 (54%), Positives = 37/50 (74%)
Frame = +2
Query: 320 VLHDFTPCVDDELEVKRGQIVNVLYRENDWVYVIVAESRREGFIPHSYCA 469
VL +F P + EL+V +G++V VLYRE+DWV V+ + RR GFIP SYC+
Sbjct: 89 VLWNFEPVENSELKVVKGEMVVVLYREDDWVLVVNSNGRR-GFIPFSYCS 137
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/54 (40%), Positives = 34/54 (62%)
Frame = +2
Query: 302 PDSKMVVLHDFTPCVDDELEVKRGQIVNVLYRENDWVYVIVAESRREGFIPHSY 463
P K +VL+DF C +D++ V +G +VNVL R++D + + EGF+P SY
Sbjct: 307 PHFKAMVLYDFEACAEDDVSVTKGDVVNVLNRDDDDWWWVTTPRGGEGFVPCSY 360
>SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 594
Score = 51.2 bits (117), Expect = 6e-07
Identities = 21/48 (43%), Positives = 33/48 (68%)
Frame = +2
Query: 326 HDFTPCVDDELEVKRGQIVNVLYRENDWVYVIVAESRREGFIPHSYCA 469
HD++ +EL + +GQ V +LY+++DW+YV+ EGFIP SYC+
Sbjct: 216 HDYSSEDPEELNLSKGQTVKILYQQHDWLYVVDLFG-NEGFIPFSYCS 262
Score = 30.7 bits (66), Expect = 0.95
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 308 SKMVVLHDFTPCVDDELEVKRGQIVNVLYREN---DWVYVIVAESRREGFIPHSY 463
S+++ L+++ D+L V G+ V ++ W++ +R GFIP +Y
Sbjct: 531 SRLISLYEYEGSAFDDLTVHAGEYVYANLKDQIVPKWIWAYSPYRKRSGFIPEAY 585
>SB_39120| Best HMM Match : SH3_1 (HMM E-Value=2e-20)
Length = 524
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/84 (22%), Positives = 39/84 (46%)
Frame = +2
Query: 281 EKEHGLSPDSKMVVLHDFTPCVDDELEVKRGQIVNVLYRENDWVYVIVAESRREGFIPHS 460
+ + P +++V++ + DEL + G ++ VLY++N+ ++ R+G+ P +
Sbjct: 301 KSKQAAQPKKQVLVMYPYEANRADELTITPGDVITVLYQDNENWWMGELADGRQGYFPSN 360
Query: 461 YCAPCEHHDLKKKLPRVDPHPFSP 532
Y E D + L P P
Sbjct: 361 YIMEKEELDSEADLKETQLPPAVP 384
>SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23)
Length = 936
Score = 36.7 bits (81), Expect = 0.014
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 314 MVVLHDFTPCVDDELEVKRGQIVNVLYREND-WVYVIVAESRREGFIPHSY 463
+V L+DF EL K+G + VL +E+D W VAE+ EG P +Y
Sbjct: 3 VVALYDFVAQEAGELNFKKGNHIEVLDKEDDNWWKGRVAETGEEGLFPRNY 53
>SB_33663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 317 VVLHDFTPCVDDELEVKRGQIVNVLYRE--NDWVYVIVAESRREGFIPHSYCAPCE 478
+ L+D+ ++L K+G+++ V + NDW ++ EG+IP +Y AP E
Sbjct: 74 LALYDYDARTQEDLSFKKGEVLEVNPDDLANDWWRAKSRDTGAEGYIPMNYVAPME 129
>SB_4655| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 934
Score = 35.9 bits (79), Expect = 0.025
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +2
Query: 278 IEKEHGLSPDSKMVVLHDFTPCVDDELEVKRGQIVNVLYREN-DWVYVIVAESRREGFIP 454
+ ++ +S +V L+D+ E+ +K+G I+ +L N DW V + R+GF+P
Sbjct: 841 VSQDTDISDKECVVALYDYQEKTAREVSMKKGDILTLLNSTNKDWWK--VETNDRQGFVP 898
Query: 455 HSYCAPCEHHDLKKKL 502
+Y + H ++L
Sbjct: 899 AAYVKRIDSHKASQEL 914
>SB_49450| Best HMM Match : SH3_1 (HMM E-Value=6.9e-17)
Length = 288
Score = 34.7 bits (76), Expect = 0.058
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 323 LHDFTPCVDDELEVKRGQIVNVLYREND-WVYVIVAESRREGFIPHSYCAPCEHHDL 490
L+++ P +DELE+K+G+ VL + D W + S++ G P +Y H L
Sbjct: 76 LYNYKPQKEDELELKQGECYYVLEKCKDGWFKGVSLHSQKRGVFPGNYVRLTSIHSL 132
>SB_38286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 34.7 bits (76), Expect = 0.058
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 323 LHDFTPCVDDELEVKRGQIVNVLYREND-WVYVIVAESRREGFIPHSYCAPCEHHDL 490
L+++ P +DELE+K+G+ VL + D W + S++ G P +Y H L
Sbjct: 76 LYNYKPQKEDELELKQGECYYVLEKCKDGWFKGVSLHSQKRGVFPGNYVRLTSIHSL 132
>SB_33662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 34.3 bits (75), Expect = 0.077
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +2
Query: 248 SKLETLVRVGIEKEHGLSPDSKM-VVLHDFTPCVDDELEVKRGQIVNVL--YRENDWVYV 418
S++ L + + E L + K+ V L+D+ D++L K+G+ + V+ DW
Sbjct: 41 SEVLPLPPIPLSTELTLPAERKLFVALYDYEARTDEDLSFKKGEKLEVVNDLDGGDWWQA 100
Query: 419 IVAESRREGFIPHSYCAP 472
S + G+IP +Y AP
Sbjct: 101 RSLVSNQVGYIPSNYVAP 118
>SB_33664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 317 VVLHDFTPCVDDELEVKRGQIVNVLYR-ENDWVYVIVAESRREGFIPHSYCAP 472
+ L+D+ +++L K+G+ + +L + DW + +EG+IP +Y AP
Sbjct: 81 MALYDYDARTNEDLSFKKGERLQLLDNTDGDWWLAKSLSTDQEGYIPSNYVAP 133
>SB_59147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 329 DFTPCVDDELEVKRGQIVNVLYRE--NDWVYVIVAESRREGFIPHSYCAPCE 478
D PC D L K+G+++ ++ +E N W V +SR G IP C E
Sbjct: 244 DQIPCQDAGLAFKQGEVLQIVDQEDANWWQAKKVDDSRAAGIIPSQICEESE 295
>SB_10519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 873
Score = 32.3 bits (70), Expect = 0.31
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 323 LHDFTPCVDDELEVKRGQIVNVLYREN-DWVYVIVAESRREGFIPHSY 463
L+D++ EL K+G I+ V R N DW + +S +GF+P SY
Sbjct: 723 LYDYSARSSKELSFKKGDIIRVFKRFNDDWWDGTLGDS--DGFVPASY 768
>SB_3027| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 299 SPDSKMVVLHDFTPCVDDELEVKRGQIVNVLYREND-WVYVIVAESRREGFIPHSYCA 469
SP+ + + +H+F DDE+++++G +V V+ + D W + + G P ++ A
Sbjct: 4 SPE-RYIAIHEFQTTRDDEIDLQKGDVVLVVKKYQDGWFRGVRCRGYQVGCFPGNFVA 60
>SB_18821| Best HMM Match : SH3_1 (HMM E-Value=5.7e-16)
Length = 299
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 314 MVVLHDFTPCVDDELEVKRGQIVNVLYRENDWVYVIVAESRREGFIPHSY 463
++ L+D+ DDEL K G+IV L +D + + R G P Y
Sbjct: 246 VLALYDYEAAEDDELSFKAGEIVTKLSERDDQGWCRGRINHRTGLFPAEY 295
>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3213
Score = 31.1 bits (67), Expect = 0.72
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 356 LEVKRGQIVNVLYREN-DWVYVIVAESRREGFIPHSYCAPCEHHDLKK 496
L V +G+++ ++ + N DW V +SR G++P +Y E +KK
Sbjct: 54 LAVDKGEVLYLIAKTNKDWWSVRRTKSREAGYVPANYVVEIEPKAVKK 101
>SB_54886| Best HMM Match : SH3_2 (HMM E-Value=3.2e-24)
Length = 440
Score = 31.1 bits (67), Expect = 0.72
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Frame = +2
Query: 311 KMVVLHDFTPCVDD-------ELEVKRGQIVNVLYRENDWVYVIVAESRREGFIPHSY 463
KMV L+D+ P EL K+GQ+V +L N Y S R G +P S+
Sbjct: 367 KMVALYDYNPETQSPLSNPSAELSFKKGQVVTILGPMNSDGYYQADISGRRGLVPASF 424
>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
Length = 2084
Score = 31.1 bits (67), Expect = 0.72
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Frame = +2
Query: 311 KMVVLHDFTPCVDD-------ELEVKRGQIVNVLYRENDWVYVIVAESRREGFIPHSY 463
KMV L+D+ P EL K+GQ+V +L N Y S R G +P S+
Sbjct: 1915 KMVALYDYNPETQSPLSNPSAELSFKKGQVVTILGPMNSDGYYQADISGRRGLVPASF 1972
>SB_37686| Best HMM Match : DUF1011 (HMM E-Value=10)
Length = 131
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -3
Query: 220 LSPELGLERSLSESPELDFFFFPLLILTGHRNAMFYNV 107
L+PE+ +RS +S + F FP+ +L HR A+F N+
Sbjct: 51 LTPEIS-QRSHGKSSKRVFSCFPVFLLLKHRRAVFVNL 87
>SB_50467| Best HMM Match : SH3_1 (HMM E-Value=1e-12)
Length = 132
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 347 DDELEVKRGQIVNVLYRENDWVYVIVAESRREGFIPHSY 463
D++L K+G I+ V+ +E D + + REG IP Y
Sbjct: 50 DEDLPFKKGDILTVISKEEDNWWKARDSAGREGMIPKPY 88
>SB_57028| Best HMM Match : PCNA_C (HMM E-Value=8.9)
Length = 161
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +2
Query: 242 RISKLETLVRVGIEKEHGLSPDSKMVVLHDFTPCVDDELE 361
++ L+ L R+ ++ LSP++K VL DF+ +DDEL+
Sbjct: 86 KVEPLKALNRIQVQLA-SLSPETKGYVLVDFSEPLDDELQ 124
>SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)
Length = 1860
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 323 LHDFTPCVDDELEVKRGQIVNVLYRENDWVY 415
+H++TP DEL + G ++NVL + D Y
Sbjct: 939 IHNYTPQQPDELALHEGDVINVLRKLPDGWY 969
>SB_41533| Best HMM Match : SH2 (HMM E-Value=6.3e-25)
Length = 389
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 350 DELEVKRGQ--IVNVLYRENDWVYVIVAESRREGFIPHSYCAPCEHHDLKKKLPRVDPHP 523
DEL +G IV+ ++ +NDW++V +S+ G +P + + P++DPH
Sbjct: 169 DELSFCKGDVFIVDNVF-DNDWLWVAAQKSKERGLVPAALVDDAD--------PKLDPHA 219
Query: 524 FSP 532
P
Sbjct: 220 GKP 222
>SB_58990| Best HMM Match : SH3_1 (HMM E-Value=1.7e-14)
Length = 167
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +2
Query: 317 VVLHDFTPCVDDELEVKRGQIVNVLYRENDWVYVIVAESRREGFIPHSY 463
V HDF DE+ K+ V +L ++ D + G IP +Y
Sbjct: 4 VAKHDFNATCSDEVSFKKAVFVKILNKDVDENWYQAEMDGNSGMIPANY 52
>SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2)
Length = 267
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = -1
Query: 444 PSLRDSATMT*TQSFSLYRTLTICPRFTSNSSSTHGVKSWSTTIFESGLRPCSFSMPTLT 265
PS + + T T S++ + T P +TS +S T STT + P S P+ T
Sbjct: 141 PSYTSTTSYTSTTSYTPTTSYTPTPSYTSTTSYTSTTSYTSTTSYTP--TPSYTSTPSYT 198
Query: 264 NVSS 253
+ +S
Sbjct: 199 STTS 202
>SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1570
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 338 PCVDDELEVKRGQIVNVLYRENDWVYVIVAESRREGFIPHSYCAP 472
P + +L KRG+ VL W+YV ++ G+IP + AP
Sbjct: 48 PDLSAQLLAKRGKKFIVLGPVGWWLYVKSVDTGDTGYIPSLHVAP 92
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,171,676
Number of Sequences: 59808
Number of extensions: 395625
Number of successful extensions: 863
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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