Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40278
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   1.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   5.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.3  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 336 VKSWSTTIFESGLRPCSFSMPTLTNVSSLLIL*CGPFQDSVLNWAW 199
           V  W+   F + LR  +  +P+  NV S  I   GP  +   NW+W
Sbjct: 70  VDRWNGKTFVTILR--NDGVPSSLNVISNKIGNGGPLLEPYPNWSW 113


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/46 (28%), Positives = 17/46 (36%)
 Frame = +2

Query: 305 DSKMVVLHDFTPCVDDELEVKRGQIVNVLYRENDWVYVIVAESRRE 442
           D K   LH       D L  +    V    R  +W+Y+  A S  E
Sbjct: 696 DDKEGYLHSVVSGALDRLHYETDPCVRYYPRRKEWLYLHRARSESE 741


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 549 LSVSDGVTNDGHSEL 593
           LSVS G  ND H+E+
Sbjct: 307 LSVSGGALNDCHAEV 321


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 357 NSSSTHGVKSWSTTIFESGLRPCSFSMPTLTNVSS 253
           +SS  HG KSW+    ++ L        +LT  S+
Sbjct: 401 SSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASA 435


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 407 WVYVIVAESRREGFIPH 457
           W+  I+ + R EG+I H
Sbjct: 356 WIDAIMTQLREEGWIHH 372


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 221 SWNGPHHRISKLETLVRV 274
           SWN PH    + +T  RV
Sbjct: 337 SWNAPHMLGGRTDTTYRV 354


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 204 PSSGLSPGMG 233
           PSSGL PG G
Sbjct: 210 PSSGLQPGEG 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,364
Number of Sequences: 438
Number of extensions: 3601
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)