Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40278
(603 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07360.1 68415.m00843 SH3 domain-containing protein contains ... 30 1.4
At2g38185.4 68415.m04692 zinc finger (C3HC4-type RING finger) fa... 28 4.1
At1g55390.1 68414.m06335 DC1 domain-containing protein similar t... 28 5.5
At1g11410.1 68414.m01311 S-locus protein kinase, putative simila... 28 5.5
At2g38220.1 68415.m04694 expressed protein 27 7.2
At2g38185.3 68415.m04691 zinc finger (C3HC4-type RING finger) fa... 27 7.2
At2g38185.2 68415.m04690 zinc finger (C3HC4-type RING finger) fa... 27 7.2
At2g38185.1 68415.m04689 zinc finger (C3HC4-type RING finger) fa... 27 7.2
At1g11420.1 68414.m01312 agenet domain-containing protein contai... 27 9.6
>At2g07360.1 68415.m00843 SH3 domain-containing protein contains Pfam
profile PF00018: SH3 domain
Length = 1196
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 323 LHDFTPCVDDELEVKRGQIVNVLYRENDWVYVIVAESRREG 445
L+DFT DDEL + + + + Y + W YV R+G
Sbjct: 1142 LYDFTAGGDDELNLTAEEELEIEYEVDGWFYVKKKRPGRDG 1182
>At2g38185.4 68415.m04692 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 872
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = -1
Query: 198 RGLYQSLQNXXXXXXXXXX*LDIEMPCFTMSKSIHNCNTSNGFC 67
+G Y ++ N +D+++ + +S +NC+ SNG C
Sbjct: 673 KGYYLTVANLKRKDVEVELDIDVKVVLYDTKQSSYNCSFSNGEC 716
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -1
Query: 189 YQSLQNXXXXXXXXXX*LDIEMPCFTMSKSIHNCNTSNGFC 67
Y ++ N +D++ + +S +NCN SNG C
Sbjct: 226 YLAVANLKSKDVEVELNIDVKAVLYDTKQSFYNCNFSNGEC 266
>At1g55390.1 68414.m06335 DC1 domain-containing protein similar to
hypothetical protein GI:4204272 from [Arabidopsis
thaliana] contains weak PHD zinc finger motifs contains
weak PHD zinc finger motifs DC1 domain, a divergent
protein kinase C domain of unknown function.
Length = 684
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +2
Query: 440 EGFIPHSYCAPC--EHHDLKKKLPRVDPHPFSP*RCFTIICI 559
EG + YCA C E H LP V HPF P T+I +
Sbjct: 48 EGRKYYYYCATCKLEFHRGCHLLPPVIRHPFHPSHLLTLISL 89
>At1g11410.1 68414.m01311 S-locus protein kinase, putative similar
to receptor-like protein kinase [Arabidopsis thaliana]
gi|4008008|gb|AAC95352; contains S-locus glycoprotein
family domain, Pfam:PF00954
Length = 840
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 220 LSPELGLERSLS-ESPELDFFFFPLLILTGHRNAMFYNVEIN 98
+SPE ++ S +S F L I+TG RN+ FY +N
Sbjct: 687 MSPEYAMDGQFSIKSDVYSFGVLILEIITGKRNSAFYEESLN 728
>At2g38220.1 68415.m04694 expressed protein
Length = 257
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = -1
Query: 198 RGLYQSLQNXXXXXXXXXX*LDIEMPCFTMSKSIHNCNTSNGFC 67
+G Y ++ N +D++ + +S +NC+ SNG C
Sbjct: 144 KGYYLTVANLKRKDIEVELDIDVKAVLYDTKQSSYNCSFSNGEC 187
>At2g38185.3 68415.m04691 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 346
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -1
Query: 189 YQSLQNXXXXXXXXXX*LDIEMPCFTMSKSIHNCNTSNGFC 67
Y ++ N +D++ + +S +NCN SNG C
Sbjct: 130 YLAVANLKSKDVEVELNIDVKAVLYDTKQSFYNCNFSNGEC 170
>At2g38185.2 68415.m04690 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 441
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -1
Query: 189 YQSLQNXXXXXXXXXX*LDIEMPCFTMSKSIHNCNTSNGFC 67
Y ++ N +D++ + +S +NCN SNG C
Sbjct: 225 YLAVANLKSKDVEVELNIDVKAVLYDTKQSFYNCNFSNGEC 265
>At2g38185.1 68415.m04689 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 441
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -1
Query: 189 YQSLQNXXXXXXXXXX*LDIEMPCFTMSKSIHNCNTSNGFC 67
Y ++ N +D++ + +S +NCN SNG C
Sbjct: 225 YLAVANLKSKDVEVELNIDVKAVLYDTKQSFYNCNFSNGEC 265
>At1g11420.1 68414.m01312 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 604
Score = 27.1 bits (57), Expect = 9.6
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = +2
Query: 287 EHGLSPDSKMVVLHDFTPC----VDDELEVKRGQIVNVLYRENDWVYVIVAESRREGFIP 454
EH L+P ++ V P V+D + G +V+ ++ W V+V E F+
Sbjct: 53 EHRLAPLTEFVDQRFIRPVPSEDVNDGVVFVEGLMVDAYLKDGWWTGVVVKTMEDEKFLV 112
Query: 455 HSYCAPCEHHDLKKKL 502
+ C P KKKL
Sbjct: 113 YFDCPPDIIQFEKKKL 128
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,538,475
Number of Sequences: 28952
Number of extensions: 281452
Number of successful extensions: 678
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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