Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40277
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   113   3e-26
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   113   3e-26
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    29   0.90 
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    27   2.1  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   3.6  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  113 bits (271), Expect = 3e-26
 Identities = 52/83 (62%), Positives = 59/83 (71%)
 Frame = +1

Query: 256 GATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDP 435
           G TYGKP   GVN LK  R+ +  AEE            +SYWV QD++YK+FEVILVDP
Sbjct: 78  GQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILVDP 137

Query: 436 SHKAIRRDPKINWIVNAVHKHRE 504
           SHKAIRRDP+INWIVN VHKHRE
Sbjct: 138 SHKAIRRDPRINWIVNPVHKHRE 160



 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 39/57 (68%), Positives = 48/57 (84%)
 Frame = +2

Query: 26  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 196
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQ 57



 Score = 52.0 bits (119), Expect = 8e-08
 Identities = 24/42 (57%), Positives = 30/42 (71%)
 Frame = +3

Query: 510 GLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 635
           GLTS G+ SRG+GKGHR++ +    + A WLR NTL LRR R
Sbjct: 163 GLTSIGKKSRGIGKGHRFNNS---PQHATWLRHNTLSLRRYR 201


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  113 bits (271), Expect = 3e-26
 Identities = 52/83 (62%), Positives = 59/83 (71%)
 Frame = +1

Query: 256 GATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDP 435
           G TYGKP   GVN LK  R+ +  AEE            +SYWV QD++YK+FEVILVDP
Sbjct: 78  GQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILVDP 137

Query: 436 SHKAIRRDPKINWIVNAVHKHRE 504
           SHKAIRRDP+INWIVN VHKHRE
Sbjct: 138 SHKAIRRDPRINWIVNPVHKHRE 160



 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 39/57 (68%), Positives = 48/57 (84%)
 Frame = +2

Query: 26  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 196
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQ 57



 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 25/42 (59%), Positives = 30/42 (71%)
 Frame = +3

Query: 510 GLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 635
           GLTS G+ SRG+GKGHRY+ +    + A WLR NTL LRR R
Sbjct: 163 GLTSIGKKSRGIGKGHRYNNS---PQHATWLRHNTLSLRRYR 201


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 386 LHKILHTSISRLSSWTRHTRPFVAILRSTGS*MLYISI 499
           L+KIL  S  ++ ++T H  P V ++ S     LYIS+
Sbjct: 47  LYKILQISAPKVGNFTIHDAPVVGLIDSILEYYLYISV 84


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 289 HHGSWACHKWHPSNWTL 239
           H G  +C  W P NWTL
Sbjct: 243 HDGDISCMAWSPINWTL 259


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 391  QDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHK 495
            +  S KY E     P H  +   PK  WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,286
Number of Sequences: 5004
Number of extensions: 58759
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)