Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40277
(728 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.) 112 2e-25
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053) 29 2.9
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4) 29 3.9
SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12) 29 5.1
SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 112 bits (270), Expect = 2e-25
Identities = 51/84 (60%), Positives = 60/84 (71%)
Frame = +1
Query: 256 GATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDP 435
GATYGKP + GVN+LK R+L+S+AEE +SYWV QDS YKYFEVI+VDP
Sbjct: 78 GATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYWVGQDSIYKYFEVIMVDP 137
Query: 436 SHKAIRRDPKINWIVNAVHKHREM 507
HKAIRRD +INWI HKHRE+
Sbjct: 138 FHKAIRRDARINWICKPTHKHREL 161
Score = 105 bits (251), Expect = 5e-23
Identities = 45/57 (78%), Positives = 53/57 (92%)
Frame = +2
Query: 26 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 196
MGAY+Y++ELY+KK SD++RFLLRVR WQYRQLT +HRA RPTRPDKARRLGY+AKQ
Sbjct: 1 MGAYKYLEELYKKKQSDLLRFLLRVRCWQYRQLTAIHRATRPTRPDKARRLGYKAKQ 57
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/42 (59%), Positives = 30/42 (71%)
Frame = +3
Query: 510 GLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 635
GLT+AG +RG+ KGH Y++ G SRRA W R NTL LRR R
Sbjct: 163 GLTAAGTKNRGMRKGHNYNKVIGSSRRANWKRHNTLSLRRYR 204
>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1434
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 115 PSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCATWWPQASSC*GATYGKPKSH 285
P D+ AH+ P T ++PC C QNPC+ P + +TYG P+ +
Sbjct: 239 PKTDANGGMQIAHQLPYPPYTGQIPCLPSSCAPQNPCS---PPGCTPQYSTYGYPQGY 293
>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
Length = 1152
Score = 29.5 bits (63), Expect = 2.9
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = +1
Query: 73 RCYAFFVA---CEGMA-VPSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCATWWP 237
RCY VA C ++ P +D+ A + P T ++PC C QNPC+ P
Sbjct: 702 RCYDINVAGINCRIISHPPKIDTTGGMQMAQQLSYPPYTGQVPCLPSSCTPQNPCS---P 758
Query: 238 QASSC*GATYGKPKSHGVNQ 297
+ +T G P++ G Q
Sbjct: 759 PGCTPQYSTSGYPQAPGYPQ 778
>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1169
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -2
Query: 265 KWHPSNWTLAATTSHTDSEYNITLFSTVA*SSGFVRPCGPGSAVH-TSQLTVLPYP 101
KW +N + + Y+ TL +TV +G+ C P +A H T++P P
Sbjct: 766 KWRLANGSSTNERTFMPDGYSATLTTTVGTPAGYQNDCKPCTAGHYCLNATIVPSP 821
>SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)
Length = 173
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 83 RFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 196
+F ++ YR+ T+MH +RP + R G+R KQ
Sbjct: 16 KFFVKRLTTPYRRRTQMHLLVSTSRPASSWRRGFRGKQ 53
>SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)
Length = 1799
Score = 28.7 bits (61), Expect = 5.1
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = +1
Query: 373 SSYWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMLV*LRL---VAAPEV 543
S W+ +D+SY F++ P ++ R++ K N AV+ EM V R V + EV
Sbjct: 931 SENWIKEDASYGEFDI----PGYRLFRKNRKGNNGGVAVYAREEMSVTRRNILGVTSAEV 986
Query: 544 SARDIDTLKQREAHAGQLGSDATLFNYVAND 636
+I K R G + NY D
Sbjct: 987 LWLEITLPKSRSFLVGTVYRPHRTSNYYGGD 1017
>SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1503
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -2
Query: 340 HVPQQWIEGCAWASTG*HHGSWACHKWHPSNW--TLAATTSHTDSEYNIT 197
H P +W+ W +T +W H PS W T+ A T +D + I+
Sbjct: 1084 HTPSKWVNTSKWVNTVNARTTWYSHT--PSKWVNTVNAKTMWSDRKTYIS 1131
>SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1608
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 517 LRLVAAPEVSARDIDTLKQREAHAGQLGSDATLFNYVANDK-HLSKTVSDFPFA*FLYS 690
L + APE+S I + Q+ A +G+ A Y+A+ K HL FP+ + Y+
Sbjct: 1171 LESMRAPELSDYYIPSKTQKNAELAYIGAGALAIGYIASPKLHLGGL---FPYCAYTYT 1226
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,408,054
Number of Sequences: 59808
Number of extensions: 494034
Number of successful extensions: 1120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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