Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40277
(728 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B) 106 1e-23
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A) 106 1e-23
At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloropl... 29 3.2
At4g39520.1 68417.m05588 GTP-binding protein, putative similar t... 27 9.6
At3g18050.1 68416.m02296 expressed protein 27 9.6
At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (ST... 27 9.6
>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
Length = 204
Score = 106 bits (255), Expect = 1e-23
Identities = 45/84 (53%), Positives = 59/84 (70%)
Frame = +1
Query: 256 GATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDP 435
G YGKP + GV QLK R+ +S+AEE +SYW+ +DS+YKY+E+ILVDP
Sbjct: 78 GIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDP 137
Query: 436 SHKAIRRDPKINWIVNAVHKHREM 507
+H A+R DP+INWI N VHKHRE+
Sbjct: 138 AHNAVRNDPRINWICNPVHKHREL 161
Score = 91.1 bits (216), Expect = 7e-19
Identities = 41/57 (71%), Positives = 47/57 (82%)
Frame = +2
Query: 26 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 196
MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ + R RPTRPDKARRLGY+AKQ
Sbjct: 1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQ 57
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = +3
Query: 510 GLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 635
GLTS G+ +RGL GKGH + + SRRA W + N++ LRR R
Sbjct: 163 GLTSEGKKNRGLRGKGHNNHKNR-PSRRATWKKNNSISLRRYR 204
>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
Length = 204
Score = 106 bits (255), Expect = 1e-23
Identities = 45/84 (53%), Positives = 59/84 (70%)
Frame = +1
Query: 256 GATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDP 435
G YGKP + GV QLK R+ +S+AEE +SYW+ +DS+YKY+E+ILVDP
Sbjct: 78 GIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDP 137
Query: 436 SHKAIRRDPKINWIVNAVHKHREM 507
+H A+R DP+INWI N VHKHRE+
Sbjct: 138 AHNAVRNDPRINWICNPVHKHREL 161
Score = 91.1 bits (216), Expect = 7e-19
Identities = 41/57 (71%), Positives = 47/57 (82%)
Frame = +2
Query: 26 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 196
MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ + R RPTRPDKARRLGY+AKQ
Sbjct: 1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQ 57
Score = 44.4 bits (100), Expect = 8e-05
Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = +3
Query: 510 GLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 635
GLTS G+ +RGL GKGH + + SRRA W + N+L LRR R
Sbjct: 163 GLTSEGKKNRGLRGKGHNNHKNR-PSRRATWKKNNSLSLRRYR 204
>At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloroplast
(FAD7) (FADD) identical to omega-3 fatty acid
desaturase, chloroplast precursor SP:P46310 [Arabidopsis
thaliana (Mouse-ear cress)]; identical to Pfam profile
PF00487: Fatty acid desaturase; identical to cDNA
plastid fatty acid desaturase GI:809491
Length = 446
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 379 YWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMLV 513
YW+AQ + + V+ D H + DPK+N +V + H +LV
Sbjct: 147 YWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHL-LHSSILV 190
>At4g39520.1 68417.m05588 GTP-binding protein, putative similar to
SP|Q9Y295 Developmentally regulated GTP-binding protein
1 (DRG 1) {Homo sapiens}; contains Pfam profiles
PF02824: TGS domain, PF01018: GTP1/OBG family
Length = 369
Score = 27.5 bits (58), Expect = 9.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 101 RVWQYRQLTRMHRAPRPTRPD 163
++W+Y LTR++ P+ PD
Sbjct: 285 KIWEYLDLTRIYTKPKAMNPD 305
>At3g18050.1 68416.m02296 expressed protein
Length = 335
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 164 CPALWAWERGAYESTDGTAIPSHATKNA*HRSVFSYTTPE 45
CP L AW AY +T + S A +N+ S + TTPE
Sbjct: 82 CPVLGAWLYSAYSTTALSRSISAAARNS-SSSSAAVTTPE 120
>At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (STM)
identical to homeobox protein SHOOT MERISTEMLESS (STM)
SP:Q38874 from [Arabidopsis thaliana]
Length = 382
Score = 27.5 bits (58), Expect = 9.6
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 5/108 (4%)
Frame = -2
Query: 406 CMKNLVQPSKSSTHGDHRNDGQHVPQQWIEGCAWASTG*HHGSWACHKWHPSNWTL--AA 233
C ++ P ++H H +D QH QQ +G A+ S S P T A
Sbjct: 24 CPMMMMMPPIMTSHQHHGHDHQH-QQQEHDGYAYQSHHQQSSSLFLQSLAPPQGTKNKVA 82
Query: 232 TTSHTDS---EYNITLFSTVA*SSGFVRPCGPGSAVHTSQLTVLPYPH 98
++S S Y++ +G + PC S+ + + ++ +PH
Sbjct: 83 SSSSPSSCAPAYSLMEIHHNEIVAGGINPCSSSSSSASVKAKIMAHPH 130
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,970,002
Number of Sequences: 28952
Number of extensions: 324352
Number of successful extensions: 739
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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