Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40276
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    55   1e-08
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    44   2e-05
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    32   0.079
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    28   0.97 
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc...    27   1.7  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    27   2.3  
SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.1  
SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr...    25   9.1  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
 Frame = +2

Query: 482 QRRRS*IYSYFWEKFDPENYSIWYAEYKYPEELAK-VFMSCNLIYGY 619
           Q  RS    +F+E FDPENYS+W  +Y YPE+L + VFM+ NLI G+
Sbjct: 275 QDTRSGALPWFFEHFDPENYSVWKVDYSYPEDLKQPVFMTNNLIGGF 321



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 19/61 (31%), Positives = 34/61 (55%)
 Frame = +1

Query: 46  DGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSA 225
           D  L ++T+LV  R+TLAD+     L     +VL  S  +   ++ R++ T+ HQ ++ A
Sbjct: 141 DEELASKTYLVGSRLTLADIFFTCFLKFGATYVLTKSYLAKYTHIYRYYQTIYHQAKLDA 200

Query: 226 V 228
           +
Sbjct: 201 I 201



 Score = 32.7 bits (71), Expect = 0.045
 Identities = 11/20 (55%), Positives = 18/20 (90%)
 Frame = +3

Query: 432 SMPKGTFNMDDFKRVYSNED 491
           S P G+F+++++KRVYSN+D
Sbjct: 257 SAPNGSFDIEEYKRVYSNQD 276


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 21/63 (33%), Positives = 38/63 (60%)
 Frame = +1

Query: 31  ALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQ 210
           +LK+ +  +  RT+LV +R TLAD+   S L   F  ++D   R  L ++ R+++T+ HQ
Sbjct: 141 SLKIPNELVKDRTYLVGDRFTLADLFFGSLLRIFFNSIIDEKTRKELPHLTRYYITMFHQ 200

Query: 211 PQV 219
            ++
Sbjct: 201 AKL 203


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 31.9 bits (69), Expect = 0.079
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +1

Query: 43  LDGHLLTRTFLVTER-ITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQV 219
           LD  L + TF+  +  I++AD+ V++ + H++   L       L NV RWF  + HQ  V
Sbjct: 128 LDEFLKSSTFIAQDSGISVADLAVYARI-HSYICGLSAKEGYKLNNVCRWFDFIQHQESV 186

Query: 220 SAVVGS 237
                S
Sbjct: 187 MEAANS 192


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 20  TYWPP*KYWTDIFSHAPSLLPRESHLPMSLS 112
           TY PP  Y  D+FS APS+   +     S+S
Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMS 287


>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 619 IPVNKVTAHEHLSEFLRVFVFGIPNGIV 536
           IP+ K T  EH+   L VF F IP+ +V
Sbjct: 234 IPIIKSTKKEHMLSDLDVFNFTIPDDVV 261


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 429 RRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYL 322
           RRGPWTP   ++     + +L   +++ L +H   L
Sbjct: 324 RRGPWTPKLVESSGGYEEHELKEIAYIMLHYHNKPL 359


>SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 551 YAEYKYPEELAKVFMSCNLIYGYV 622
           Y   K   ELA +F SCNLI+  +
Sbjct: 42  YPTNKVLSELAALFESCNLIFDLI 65


>SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 462 DFKRVYSNEDEAKSIPTSGRSLTPRTIP 545
           DF  +YS ED+  SIP S    T R  P
Sbjct: 117 DFTPIYSKEDQVVSIPFSEFKPTYRGRP 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,068
Number of Sequences: 5004
Number of extensions: 43784
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)