Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40276
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 54 7e-08
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 52 3e-07
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937... 44 1e-04
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681... 40 0.002
02_05_1202 + 34932291-34933027,34933297-34933774 35 0.062
07_01_0377 + 2823602-2823880,2824372-2824569,2824611-2824709 31 1.0
07_03_0346 - 17010472-17010843 30 1.8
06_01_0611 + 4420873-4422207 30 1.8
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111 29 4.1
08_02_0792 + 21233578-21233710,21233807-21233936,21234097-21234766 29 4.1
03_03_0142 + 14800317-14801240 29 4.1
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409... 28 7.1
07_03_1363 - 26022333-26023225,26023319-26023451 27 9.4
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 27 9.4
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 54.4 bits (125), Expect = 7e-08
Identities = 27/77 (35%), Positives = 44/77 (57%)
Frame = +1
Query: 4 ERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQ 183
E A + L +L L+ HL + T+LV +TLAD+++ L + F +L S S +V+
Sbjct: 152 EFAITSLKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYYGFVRILIKSFTSEFPHVE 211
Query: 184 RWFLTVAHQPQVSAVVG 234
R+F T+ +QP V+G
Sbjct: 212 RYFWTMVNQPNFKKVIG 228
Score = 43.6 bits (98), Expect = 1e-04
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +2
Query: 512 FWEKFDPENYSIWYAEYKYPEELAKVFMSCN 604
FW+ +DPE YS+W+ +YKY +E F++ N
Sbjct: 316 FWDMYDPEGYSLWFCDYKYNDENTVSFVTMN 346
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 52.4 bits (120), Expect = 3e-07
Identities = 26/77 (33%), Positives = 43/77 (55%)
Frame = +1
Query: 4 ERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQ 183
E A + L +L L+ HL + T+LV +TLAD+++ L F ++ S S +V+
Sbjct: 137 EAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKSFTSEFPHVE 196
Query: 184 RWFLTVAHQPQVSAVVG 234
R+F T+ +QP V+G
Sbjct: 197 RYFWTMVNQPNFKKVLG 213
Score = 51.2 bits (117), Expect = 7e-07
Identities = 25/77 (32%), Positives = 43/77 (55%)
Frame = +1
Query: 4 ERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQ 183
E A + L +L L+ HL + T+LV +TLAD+++ L F ++ + S +V+
Sbjct: 698 EAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKNFTSEFPHVE 757
Query: 184 RWFLTVAHQPQVSAVVG 234
R+F T+ +QP V+G
Sbjct: 758 RYFWTMVNQPNFKKVMG 774
Score = 46.8 bits (106), Expect = 1e-05
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +2
Query: 512 FWEKFDPENYSIWYAEYKYPEELAKVFMSCNLIYGYV 622
FW+ +DPE YS+W+ +YKY +E F++ N + G++
Sbjct: 299 FWDMYDPEGYSLWFCDYKYNDENTVSFVTMNKVGGFL 335
Score = 46.8 bits (106), Expect = 1e-05
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +2
Query: 512 FWEKFDPENYSIWYAEYKYPEELAKVFMSCNLIYGYV 622
FW+ +DPE YS+W+ +YKY +E F++ N + G++
Sbjct: 864 FWDMYDPEGYSLWFCDYKYNDENTVSFVTMNKVGGFL 900
>01_01_1176 -
9372879-9373097,9373814-9374278,9374372-9375447,
9375534-9375687,9375783-9375879,9376238-9376374
Length = 715
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = +1
Query: 16 SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFL 195
S+ AA LDG+L +RTFLV+ +++AD++V+S L Q N+ RWF
Sbjct: 93 SEFEAACSFLDGYLASRTFLVSYGLSIADIVVWSNLAGTGQRWESLRRSKKYQNLVRWFN 152
Query: 196 TVA 204
++A
Sbjct: 153 SIA 155
>10_06_0131 -
11066033-11066251,11066548-11067012,11067102-11068177,
11068269-11068422,11068511-11068601,11069016-11069152
Length = 713
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +1
Query: 16 SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWF 192
S+ A +DG+L++RTFLV +T+AD+ V+S L Q N+ RWF
Sbjct: 91 SEFEVACSFVDGYLMSRTFLVGHVLTIADITVWSNLAGIGQRWESLRKSKKYQNLVRWF 149
>02_05_1202 + 34932291-34933027,34933297-34933774
Length = 404
Score = 34.7 bits (76), Expect = 0.062
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +1
Query: 4 ERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLL 126
+ A +L AAL L+ HL +L + +TLADV +F+TL+
Sbjct: 257 DAAAGELFAALDRLEDHLSGSRYLCGDTLTLADVCLFTTLV 297
>07_01_0377 + 2823602-2823880,2824372-2824569,2824611-2824709
Length = 191
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +1
Query: 4 ERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIV--FSTLLHAF-QHV 144
E AK++LL L+ L+G L R+F + D+++ FS++ H + QH+
Sbjct: 110 EMAKAELLDQLRRLEGVLGDRSFFSGDEFGFLDIVLIPFSSMFHGYKQHM 159
>07_03_0346 - 17010472-17010843
Length = 123
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +3
Query: 204 PPATSVGRRRLAHALCGPPTYDPKKYQELAGA 299
P AT V R A G P DP +Y+ LAGA
Sbjct: 6 PTATPVDTRAKLSASDGTPVKDPTEYRSLAGA 37
>06_01_0611 + 4420873-4422207
Length = 444
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = +3
Query: 162 FVADKRSAL-----VPDRRPPATSVGRRRLAHALC 251
+V D+ +AL P RRPPA S RRRLA + C
Sbjct: 279 YVMDEHAALRVAVRTPKRRPPARSRSRRRLALSEC 313
>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
Length = 553
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 59 SHAPSLLPRESHLPMSLSS 115
+H PSL+P ESHL S+SS
Sbjct: 498 NHQPSLVPNESHLNNSVSS 516
>08_02_0792 + 21233578-21233710,21233807-21233936,21234097-21234766
Length = 310
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = -3
Query: 438 ASSRRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYLFCPPSCSV---HQLTPG 280
A ++GPWTP QE P +W A+ +T + C SC + + L PG
Sbjct: 10 AEVKKGPWTPEEDLMLVAYVQEH-GPGNWRAVPTNTGLMRCSKSCRLRWTNYLRPG 64
>03_03_0142 + 14800317-14801240
Length = 307
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -3
Query: 429 RRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYLFCPPSCSV---HQLTPG 280
++GPWTP QE P +W A+ T L C SC + + L PG
Sbjct: 13 KKGPWTPEEDMVLASYVQEH-GPGNWRAVPPRTGLLRCSKSCRLRWTNYLRPG 64
>03_06_0642 +
35239658-35240083,35240167-35240238,35240305-35240919,
35241253-35241435,35241604-35241663,35241733-35241936,
35242497-35242745,35243609-35243707,35243760-35243858,
35244463-35244480,35244668-35244862,35244981-35245073,
35245265-35245531,35245884-35246102
Length = 932
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +3
Query: 138 ARAR-PERPFVADKRSA---LVPDRRPPATSVGRRR 233
+RAR P PF + RS+ PDRRPP T R R
Sbjct: 28 SRARTPRAPFPSTSRSSNPYSFPDRRPPPTPRSRSR 63
>07_03_1363 - 26022333-26023225,26023319-26023451
Length = 341
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -3
Query: 429 RRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYLFCPPSCSV---HQLTPG 280
++GPWTP QE P +W A+ T + C SC + + L PG
Sbjct: 13 KKGPWTPEEDLVLVSYVQEH-GPGNWRAVPTRTGLMRCSKSCRLRWTNYLRPG 64
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +1
Query: 1 VERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINV 180
V+ + L L V D HL +L R +LAD S LL + + V +S +V
Sbjct: 137 VDEHAAALAQVLDVYDAHLAGSRYLAGNRFSLADANHMSYLLFLSKTPMAELV-ASRPHV 195
Query: 181 QRWFLTVAHQP 213
+ W+ ++ +P
Sbjct: 196 KAWWDDISSRP 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,278,924
Number of Sequences: 37544
Number of extensions: 347794
Number of successful extensions: 1048
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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