Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40276
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)                  56   2e-08
SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                 35   0.048
SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)                 29   4.1  
SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)                    28   5.5  
SB_32980| Best HMM Match : DEAD (HMM E-Value=0)                        28   7.2  
SB_54539| Best HMM Match : Pentaxin (HMM E-Value=3.6)                  27   9.6  
SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)
          Length = 90

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 22/40 (55%), Positives = 29/40 (72%), Gaps = 2/40 (5%)
 Frame = +2

Query: 509 YFWEKFDPENYSIWYAEYK--YPEELAKVFMSCNLIYGYV 622
           YFWE FD E YS+W+ EYK  Y ++L  VFM+CNL+ G +
Sbjct: 24  YFWENFDKEGYSLWFLEYKEEYEKDLGMVFMACNLVGGMI 63



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/22 (59%), Positives = 19/22 (86%), Gaps = 1/22 (4%)
 Frame = +3

Query: 447 TFNMDDFKRVYSNED-EAKSIP 509
           + N+D +K+VYSNED E+K+IP
Sbjct: 2   SMNLDAWKKVYSNEDTESKAIP 23


>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score = 35.1 bits (77), Expect = 0.048
 Identities = 17/40 (42%), Positives = 26/40 (65%)
 Frame = +1

Query: 4   ERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTL 123
           ++A  D+   + +L+  LL +TFLV ER+TLAD+ V   L
Sbjct: 106 DKAMEDVKKYMTMLNDVLLMKTFLVGERVTLADIAVCCVL 145


>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
          Length = 260

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +1

Query: 1   VERAK--SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLI 174
           VE AK  +D+   L  ++ HL  R FLV + +T+AD  V +T +      L    R    
Sbjct: 114 VEGAKIVADINKFLGFVEKHLAGRKFLVGDSVTIADFSV-ATSIAVILTSLGDEDRKPYQ 172

Query: 175 NVQRWF 192
           N+  W+
Sbjct: 173 NIVSWY 178


>SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)
          Length = 1675

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +3

Query: 63   THLPCYRENHTCRCHCLQYTAACFPARARPERPFVAD---KRSALVP 194
            T  P +R +HT     L+     +PA+ RP+ P  A    K+ A VP
Sbjct: 1581 TQCPIFRPSHTIHHPPLRSRNVRYPAQVRPQYPLQASLNVKKGARVP 1627


>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 985

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +3

Query: 54  SSHTHLPC--YRENHTCRCHCLQYT 122
           S +T  PC  Y+   TC C C+ YT
Sbjct: 873 SHYTPFPCPHYQGGPTCECQCMGYT 897


>SB_54539| Best HMM Match : Pentaxin (HMM E-Value=3.6)
          Length = 396

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -2

Query: 292 ANSWYFLGSYVGGPHRA*ASRRRPTLVAGGRRSGTNAERLSATNGRSGLAR 140
           A  WY +G  +  P +   ++R P    G   SGT  +   A +GR   +R
Sbjct: 333 AKDWYEIGQVLTDPKKF--NKREPATCKGPIASGTQGDYSGARSGRRKSSR 381


>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1266

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 432 SMPKGTFNMDDFK-RVYSNEDEAKSIPTSGRSLTPRTIPFGMPN-TNTLRNSLR 587
           S+P    N ++F  + ++NE E K    +GRSLTP +      N T   R+S+R
Sbjct: 316 SVPSYVLNKNEFAMKKFANEQERKRAK-AGRSLTPESSISAFSNGTRYSRSSVR 368


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,155,092
Number of Sequences: 59808
Number of extensions: 373662
Number of successful extensions: 1141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)