Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40276
(632 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72507-7|CAD56569.1| 373|Caenorhabditis elegans Hypothetical pr... 82 4e-16
Z72507-6|CAA96631.1| 398|Caenorhabditis elegans Hypothetical pr... 82 4e-16
Z72507-15|CAJ55245.1| 365|Caenorhabditis elegans Hypothetical p... 62 3e-10
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z81054-8|CAB02886.3| 341|Caenorhabditis elegans Hypothetical pr... 28 6.4
>Z72507-7|CAD56569.1| 373|Caenorhabditis elegans Hypothetical
protein F17C11.9b protein.
Length = 373
Score = 81.8 bits (193), Expect = 4e-16
Identities = 41/78 (52%), Positives = 56/78 (71%)
Frame = +1
Query: 1 VERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINV 180
VE+ K++L L+VLD L+ +T+LV ER++LADV V LL AFQ+VLD + R S++NV
Sbjct: 81 VEQYKNELNGQLQVLDRVLVKKTYLVGERLSLADVSVALDLLPAFQYVLDANARKSIVNV 140
Query: 181 QRWFLTVAHQPQVSAVVG 234
RWF TV +QP V V+G
Sbjct: 141 TRWFRTVVNQPAVKEVLG 158
Score = 62.1 bits (144), Expect = 3e-10
Identities = 24/36 (66%), Positives = 28/36 (77%)
Frame = +2
Query: 509 YFWEKFDPENYSIWYAEYKYPEELAKVFMSCNLIYG 616
+FWE FD +N+SIW EYKYPE+L FMSCNLI G
Sbjct: 247 HFWENFDADNWSIWKCEYKYPEDLTLAFMSCNLING 282
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/29 (68%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Frame = +3
Query: 426 FDSMPKGTFNMDDFKRVYSNEDEA-KSIP 509
F MPKGTF +D+FKR YSNED A K+IP
Sbjct: 218 FQDMPKGTFVLDNFKRSYSNEDTATKAIP 246
>Z72507-6|CAA96631.1| 398|Caenorhabditis elegans Hypothetical
protein F17C11.9a protein.
Length = 398
Score = 81.8 bits (193), Expect = 4e-16
Identities = 41/78 (52%), Positives = 56/78 (71%)
Frame = +1
Query: 1 VERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINV 180
VE+ K++L L+VLD L+ +T+LV ER++LADV V LL AFQ+VLD + R S++NV
Sbjct: 106 VEQYKNELNGQLQVLDRVLVKKTYLVGERLSLADVSVALDLLPAFQYVLDANARKSIVNV 165
Query: 181 QRWFLTVAHQPQVSAVVG 234
RWF TV +QP V V+G
Sbjct: 166 TRWFRTVVNQPAVKEVLG 183
Score = 62.1 bits (144), Expect = 3e-10
Identities = 24/36 (66%), Positives = 28/36 (77%)
Frame = +2
Query: 509 YFWEKFDPENYSIWYAEYKYPEELAKVFMSCNLIYG 616
+FWE FD +N+SIW EYKYPE+L FMSCNLI G
Sbjct: 272 HFWENFDADNWSIWKCEYKYPEDLTLAFMSCNLING 307
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/29 (68%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Frame = +3
Query: 426 FDSMPKGTFNMDDFKRVYSNEDEA-KSIP 509
F MPKGTF +D+FKR YSNED A K+IP
Sbjct: 243 FQDMPKGTFVLDNFKRSYSNEDTATKAIP 271
>Z72507-15|CAJ55245.1| 365|Caenorhabditis elegans Hypothetical
protein F17C11.9c protein.
Length = 365
Score = 62.1 bits (144), Expect = 3e-10
Identities = 24/36 (66%), Positives = 28/36 (77%)
Frame = +2
Query: 509 YFWEKFDPENYSIWYAEYKYPEELAKVFMSCNLIYG 616
+FWE FD +N+SIW EYKYPE+L FMSCNLI G
Sbjct: 239 HFWENFDADNWSIWKCEYKYPEDLTLAFMSCNLING 274
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +1
Query: 136 QHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVG 234
Q+VLD + R S++NV RWF TV +QP V V+G
Sbjct: 118 QYVLDANARKSIVNVTRWFRTVVNQPAVKEVLG 150
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/29 (68%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Frame = +3
Query: 426 FDSMPKGTFNMDDFKRVYSNEDEA-KSIP 509
F MPKGTF +D+FKR YSNED A K+IP
Sbjct: 210 FQDMPKGTFVLDNFKRSYSNEDTATKAIP 238
>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical
protein F25C8.3b protein.
Length = 3175
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 139 HVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGS 237
H L PS+ ++L +V RW L A P V GS
Sbjct: 85 HGLSPSLSNALASVSRWKLVRAALPHVIQCCGS 117
>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical
protein F25C8.3a protein.
Length = 3184
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 139 HVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGS 237
H L PS+ ++L +V RW L A P V GS
Sbjct: 85 HGLSPSLSNALASVSRWKLVRAALPHVIQCCGS 117
>Z81054-8|CAB02886.3| 341|Caenorhabditis elegans Hypothetical
protein F01D4.7 protein.
Length = 341
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = -1
Query: 524 TSPRSRNRFSFVFVGVDTLEII---HVEGTFRH 435
TSP S+ R +++F+ ++ L ++ H G +RH
Sbjct: 182 TSPSSKLRINYIFITINVLNVLTLMHSIGLYRH 214
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,163,563
Number of Sequences: 27780
Number of extensions: 264892
Number of successful extensions: 768
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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