Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40276
(632 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative / ... 54 6e-08
At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative / ... 54 8e-08
At5g44000.1 68418.m05384 glutathione S-transferase C-terminal do... 36 0.022
At2g18110.1 68415.m02105 elongation factor 1-beta, putative / EF... 34 0.090
At1g30230.1 68414.m03698 elongation factor 1-beta / EF-1-beta id... 32 0.28
At1g77290.1 68414.m09001 tetrachloro-p-hydroquinone reductive de... 32 0.36
At5g07270.1 68418.m00829 ankyrin repeat family protein contains ... 29 3.4
At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase / lon... 29 3.4
At5g26710.1 68418.m03168 glutamate-tRNA ligase, putative / gluta... 28 5.9
At3g28910.1 68416.m03608 myb family transcription factor (MYB30)... 28 5.9
At2g31180.1 68415.m03807 myb family transcription factor (MYB14)... 27 7.8
At1g79550.2 68414.m09274 phosphoglycerate kinase, putative simil... 27 7.8
At1g79550.1 68414.m09273 phosphoglycerate kinase, putative simil... 27 7.8
At1g27850.1 68414.m03413 expressed protein similar to En/Spm-lik... 27 7.8
>At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative /
eEF-1B gamma, putative Similar to elongation factor
1-gamma (gb|EF1G_XENLA). ESTs
gb|T20564,gb|T45940,gb|T04527 come from this gene
Length = 414
Score = 54.4 bits (125), Expect = 6e-08
Identities = 31/77 (40%), Positives = 42/77 (54%)
Frame = +1
Query: 4 ERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQ 183
E A S L AL L+ HL + T+LV ITLAD+I L F V+ S +V+
Sbjct: 128 EGAISTLKRALDALNTHLTSNTYLVGHSITLADIITVCNLNLGFATVMTKKFTSEFPHVE 187
Query: 184 RWFLTVAHQPQVSAVVG 234
R+F TV +QP + V+G
Sbjct: 188 RYFWTVVNQPNFTKVLG 204
Score = 46.4 bits (105), Expect = 2e-05
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +2
Query: 512 FWEKFDPENYSIWYAEYKYPEELAKVFMSCNLIYGYV 622
FW+ +DPE YS+W+ +YKY +E F++ N + G++
Sbjct: 290 FWDMYDPEGYSLWFCDYKYNDENMVSFVTLNKVGGFL 326
>At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative /
eEF-1B gamma, putative similar to elongation factor 1B
gamma GI:3868758 from [Oryza sativa]
Length = 413
Score = 54.0 bits (124), Expect = 8e-08
Identities = 28/77 (36%), Positives = 43/77 (55%)
Frame = +1
Query: 4 ERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQ 183
E A S L L+ L+ HL + TFLV +TLAD++ L F V+ S+ +V+
Sbjct: 128 EAAISALKRGLEALNTHLASNTFLVGHSVTLADIVTICNLNLGFATVMTKKFTSAFPHVE 187
Query: 184 RWFLTVAHQPQVSAVVG 234
R+F T+ +QP+ V+G
Sbjct: 188 RYFWTMVNQPEFKKVLG 204
Score = 46.4 bits (105), Expect = 2e-05
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +2
Query: 512 FWEKFDPENYSIWYAEYKYPEELAKVFMSCNLIYGYV 622
FW+ +DPE YS+W+ +YKY +E F++ N + G++
Sbjct: 289 FWDMYDPEGYSLWFCDYKYNDENMVSFVTLNKVGGFL 325
>At5g44000.1 68418.m05384 glutathione S-transferase C-terminal
domain-containing protein contains Pfam domain PF00043:
Glutathione S-transferase, C-terminal domain
Length = 399
Score = 35.9 bits (79), Expect = 0.022
Identities = 16/39 (41%), Positives = 27/39 (69%)
Frame = +1
Query: 10 AKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLL 126
A ++L + L ++ HL + +L ER+TLADV +F+TL+
Sbjct: 268 AVNELFSTLDEIEDHLGSNRYLCGERLTLADVCLFTTLI 306
>At2g18110.1 68415.m02105 elongation factor 1-beta, putative /
EF-1-beta, putative nearly identical to eEF-1beta
[Arabidopsis thaliana] GI:398606
Length = 231
Score = 33.9 bits (74), Expect = 0.090
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = +1
Query: 28 AALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAH 207
+ LK LD HLLTR+++ + + D+ VF+ L S +NV RWF +
Sbjct: 11 SGLKKLDEHLLTRSYITGYQASKDDITVFT--------ALSKPPTSEFVNVSRWFNHIDA 62
Query: 208 QPQVSAV 228
++S V
Sbjct: 63 LLRISGV 69
>At1g30230.1 68414.m03698 elongation factor 1-beta / EF-1-beta
identical to SP|P48006 Elongation factor 1-beta
(EF-1-beta) {Arabidopsis thaliana}
Length = 231
Score = 32.3 bits (70), Expect = 0.28
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = +1
Query: 28 AALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAH 207
A LK LD HLLTR+++ + + D+ VF+ L P+ S +N RW+ +
Sbjct: 11 AGLKKLDEHLLTRSYITGYQASKDDITVFAAL------AKPPT--SQYVNASRWYNHIDA 62
Query: 208 QPQVSAV 228
++S V
Sbjct: 63 LLRISGV 69
>At1g77290.1 68414.m09001 tetrachloro-p-hydroquinone reductive
dehalogenase-related contains similarity to
tetrachloro-p-hydroquinone reductive dehalogenase
GI:148689 from [Flavobacterium sp.]
Length = 266
Score = 31.9 bits (69), Expect = 0.36
Identities = 20/78 (25%), Positives = 35/78 (44%)
Frame = +1
Query: 1 VERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINV 180
+ R+K LL L ++ L T+L ++ADV++ L L+ SS N+
Sbjct: 161 LRRSKDHLLRLLDEVETKLEGTTYLAGNEFSMADVMLIPVLARLSLLDLEEEYISSRKNL 220
Query: 181 QRWFLTVAHQPQVSAVVG 234
++ V +P V+G
Sbjct: 221 AEYWALVRRRPSYKKVIG 238
>At5g07270.1 68418.m00829 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 513
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Frame = +2
Query: 5 NVQSLTYWPP*-------KYWTDIFSHAPSLLPRESHLPMSLSSVHCCML 133
NV S+T PP ++ F PS L RE LPMSL CML
Sbjct: 344 NVPSVTVGPPGSIPCPLCRHGITAFKRLPSSLTREMKLPMSLGFCAPCML 393
>At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase /
long-chain acyl-CoA synthetase nearly identical to acyl
CoA synthetase (MF45P) GI:1617268 from [Brassica napus]
Length = 665
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -1
Query: 176 FISDERTLGSSTCWKACSSVLKTMTSASVILSVTRKVRVRRCPS 45
F+ ++ +C K CSS LKT+ S + S ++ +C S
Sbjct: 156 FVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQKEEAKNQCVS 199
>At5g26710.1 68418.m03168 glutamate-tRNA ligase, putative /
glutamyl-tRNA synthetase, putatuve / GluRS, putative
identical to gi:3435196
Length = 719
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 43 LDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTV 201
+D +L + TFLV +++ADV ++S L Q ++ RWF ++
Sbjct: 104 VDKYLESSTFLVGHSLSIADVAIWSALAGTGQRWESLRKSKKYQSLVRWFNSI 156
>At3g28910.1 68416.m03608 myb family transcription factor (MYB30)
identical to myb-like protein GB:AJ007289 [Arabidopsis
thaliana] (Plant J. 20 (1), 57-66 (1999))
Length = 323
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = -3
Query: 429 RRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYLFCPPSCSV---HQLTPG 280
++GPWTP QE P +W A+ +T L C SC + + L PG
Sbjct: 13 KKGPWTPEEDIILVTYIQEH-GPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPG 64
>At2g31180.1 68415.m03807 myb family transcription factor (MYB14)
similar to myb-related transcription factor GI:1370140
from [Lycopersicon esculentum]
Length = 249
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -3
Query: 429 RRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYLFCPPSC 304
+RGPWTP Q + S+W AL H L C SC
Sbjct: 13 KRGPWTPEEDQIL-INYIHLYGHSNWRALPKHAGLLRCGKSC 53
>At1g79550.2 68414.m09274 phosphoglycerate kinase, putative similar
to SP|P41758 Phosphoglycerate kinase, chloroplast
precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii};
contains Pfam profile PF00162: phosphoglycerate kinase
Length = 401
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 568 VFVFGIPNGIVLGVKLLPEVGIDLASSSLE*TRLKSSMLKVPLGI 434
+F F G+ +G L+ E +DLA S +E + K L +P +
Sbjct: 227 IFTFYKAQGLSVGSSLVEEDKLDLAKSLMEKAKAKGVSLLLPTDV 271
>At1g79550.1 68414.m09273 phosphoglycerate kinase, putative similar
to SP|P41758 Phosphoglycerate kinase, chloroplast
precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii};
contains Pfam profile PF00162: phosphoglycerate kinase
Length = 401
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 568 VFVFGIPNGIVLGVKLLPEVGIDLASSSLE*TRLKSSMLKVPLGI 434
+F F G+ +G L+ E +DLA S +E + K L +P +
Sbjct: 227 IFTFYKAQGLSVGSSLVEEDKLDLAKSLMEKAKAKGVSLLLPTDV 271
>At1g27850.1 68414.m03413 expressed protein similar to En/Spm-like
transposon protein GB:AAB95292 GI:2088658 from
[Arabidopsis thaliana]
Length = 1148
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 238 ASRRRPTLVAGGRRSGTNAERLSATNGR 155
+S R P+ A GRRSGT R+S T G+
Sbjct: 171 SSARHPS-PASGRRSGTPVRRISPTPGK 197
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,530,841
Number of Sequences: 28952
Number of extensions: 254548
Number of successful extensions: 733
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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