Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40275
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    29   0.40 
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    29   0.70 
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    27   2.1  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   6.5  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   6.5  
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    25   6.5  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   8.7  

>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -3

Query: 395 SDQDMNGIASPS---RPAEIMPLSQRTQKPRYSP 303
           SD ++ G+  P    +PA  +PLS+R+  P Y+P
Sbjct: 30  SDPELIGLLKPDNVDKPANSIPLSKRSTSPSYAP 63


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = -3

Query: 467 SIFKELVAPQLVQXXXXXTGKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIP 288
           SI  ELV PQL          G     D  G  S   P+E+MPL  + +      P  +P
Sbjct: 197 SILSELVLPQLHDFKGLSPTSG-----DQTGNISFGLPSEVMPLFPQIEAVYEMYPHSLP 251

Query: 287 GLSIS 273
           G +++
Sbjct: 252 GFNVN 256


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +2

Query: 266 IRLKLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHSYLGLIPNLSQFTTSE 427
           + L +    F   G   V G V +A+   +  RVK   ++LG  P +   T SE
Sbjct: 564 VELSISKNIFFIGGGKAVHGLVNLASSRNVSDRVKCMVNFLGTEPLVGLKTASE 617


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 119 GSVQFKVRAAND-AHIALTTGPQESDPMYEVMIGGWGNAKSVIRKNKPSPI 268
           G ++  V  AND  ++ L T  ++SDP   V++G    A++V   N  +PI
Sbjct: 757 GVMRLSVIKANDLVNVELPT--RKSDPYARVIVGNSVVARTVYTPNNLNPI 805


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 568 RPEGVRFPSVSPPRVSQGVAA*QSKLLQVQSVALRFSRSLWHPSLCRLRRS 416
           +P   R PS   P +S+G A     +  +     R  RSL+ PSL ++++S
Sbjct: 375 KPNMGRIPSA--PSLSKGRAMTADNMDMLSLTTRRSRRSLYSPSLMQMQQS 423


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = -3

Query: 521 PRGCRVTKQAATGAVGGTSIFKELVAPQLVQXXXXXTGKGSGSDQDMNGIASPSRPAEI 345
           P G   T  A   A    + F +L APQLVQ      G G+   +D   +A    PA I
Sbjct: 227 PPGTGKTLLARACAAQSNATFLKLAAPQLVQ---MFIGDGAKLVRDAFALAKEKSPAII 282


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 401 SGSDQDMNGIASPSRPAEI-MPLSQRT 324
           SGS  D+  I SP+ PAE   P + RT
Sbjct: 82  SGSSSDLLNIESPASPAEASSPFTVRT 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,088
Number of Sequences: 5004
Number of extensions: 55590
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)