Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40275
(610 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 33 0.13
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931 31 0.71
01_01_1054 + 8330081-8330137,8330229-8330321,8330445-8330504,833... 31 0.94
11_02_0015 - 7355989-7357092 30 1.6
08_01_0876 - 8598664-8599374 29 2.2
06_03_0279 + 19100499-19100927 29 2.2
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289... 29 2.2
07_01_0776 + 5983684-5983857,5983962-5984072,5984151-5984302,598... 29 2.9
02_04_0317 + 21996324-21996681,21996833-21996859,21997299-219982... 29 3.8
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 28 6.7
04_04_0072 + 22524974-22525310,22526334-22526552,22526826-225275... 28 6.7
01_06_1740 - 39575614-39576981 28 6.7
05_01_0488 - 4070506-4072277,4072455-4072557 27 8.8
04_04_0837 + 28547815-28547970,28548073-28548783 27 8.8
02_03_0101 + 15233783-15234601 27 8.8
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 33.5 bits (73), Expect = 0.13
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +1
Query: 271 VEIESPGILNGGEYRGFWVRWDSGIIS--AGREGEAIPFISWSDPEP-FPVYYVGVCTSW 441
V++ G+ ++ +W+ G+IS GR W DP+P V YVG+ +SW
Sbjct: 88 VDVAGIGLCCSSSFQSYWISIYDGLISIGQGRHPNNNILFQWLDPDPNRNVQYVGL-SSW 146
Query: 442 GATSSLK-IEVPPTAP 486
+ I + P+AP
Sbjct: 147 DKHVGYRNISLMPSAP 162
>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
Length = 246
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 295 LNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEP 405
L G +R WV W +I AG G F+ PEP
Sbjct: 195 LVGWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQPEP 231
>01_01_1054 +
8330081-8330137,8330229-8330321,8330445-8330504,
8330703-8330975,8331107-8331181,8331269-8331325,
8331409-8331549,8331656-8331706,8331795-8331944,
8331974-8332057,8332171-8332273,8332451-8332527,
8333469-8333704,8334000-8334078,8335123-8335218,
8335735-8335828,8336325-8336423,8336663-8337453
Length = 871
Score = 30.7 bits (66), Expect = 0.94
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Frame = +3
Query: 414 LLRRSLHKLGCHKLLENRSATDCTCS---SLLCYAATPWLTLGGLTEGKRTPSGLGGLPE 584
L + H + CH + NR T CTC L PW LGG T P L PE
Sbjct: 542 LSQHVFHPVTCHAM--NR--TLCTCQVAMQSLDVLLYPWNILGGHTSWGNLPPSLRPPPE 597
Query: 585 GNVTP 599
G P
Sbjct: 598 GGYPP 602
>11_02_0015 - 7355989-7357092
Length = 367
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +2
Query: 245 RKNKPSP-----IRLKLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHS 382
R+ KP P +RL LKA ++ T+ G + ALS LD RV F S
Sbjct: 13 RRTKPKPPMSRLMRLSLKAVDWATDATRRADGTLNRLALSVLDPRVPAFSS 63
>08_01_0876 - 8598664-8599374
Length = 236
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 530 WRANGRKTYPLRSWRATGGK 589
WR GRK R WR GGK
Sbjct: 88 WRGGGRKEEATRIWRGAGGK 107
>06_03_0279 + 19100499-19100927
Length = 142
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = -3
Query: 446 APQLVQXXXXXTGKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIP 288
AP L+ G+G + + +PL+ R PR SPPL +P
Sbjct: 78 APPLLSFSRADGGRGEATRPSRRHAPVDAEEEPPLPLATRAPLPRRSPPLALP 130
>01_06_0837 -
32328191-32328369,32328682-32328731,32328844-32328923,
32329193-32329345,32329505-32329654,32329877-32330000,
32330086-32330198,32330287-32330420,32330566-32331232
Length = 549
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +1
Query: 283 SPGILNGGEYRGF---WVRWDSGIISAGREGEAIPFISWSDPEPFPVYY 420
SP +L GG Y G W+R I+ G + P + + D P ++Y
Sbjct: 211 SPVVLFGGSYGGMLAAWMRLKYPHIAVGALASSAPILQFEDVVPSTIFY 259
>07_01_0776 +
5983684-5983857,5983962-5984072,5984151-5984302,
5984403-5984460,5984568-5984616,5984714-5984958,
5985129-5985206,5986016-5986246
Length = 365
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 397 PEPFPVYYVGVCTSWGATSSLKIEVP-PTAPVAA 495
P PFP+Y+ G ++ A +S+ VP PTA A
Sbjct: 73 PVPFPMYHPGAAAAYYAHASMAAGVPYPTAEAMA 106
>02_04_0317 +
21996324-21996681,21996833-21996859,21997299-21998227,
21998317-21999162
Length = 719
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 349 SAGREGEAIPFISWSDPEPFPVYYVGVCTSWGATSSLK 462
+A GE +P W+ E P YY G + W + SLK
Sbjct: 39 AARAAGEVVPVYVWAPEEDGP-YYPGRVSRWWLSQSLK 75
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = -3
Query: 392 DQDMNGIASPSRPAEIMPLS-QR----TQKPRYSPPLRIP 288
D+ + SP+ PA P S QR Q PRY PPLR P
Sbjct: 324 DRAASPARSPASPARRGPQSPQRRVSPAQSPRYQPPLRKP 363
>04_04_0072 +
22524974-22525310,22526334-22526552,22526826-22527532,
22527664-22528482
Length = 693
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 364 GEAIPFISWSDPEPFPVYYVGVCTSWGATSSLK 462
GE +P W+ E P YY G + W + SLK
Sbjct: 37 GEVVPAYVWAPEEDGP-YYPGRVSRWWLSQSLK 68
>01_06_1740 - 39575614-39576981
Length = 455
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 598 GVTFPSGSPPRPEGVRFPSVSPPRVSQGVA 509
GVT+P+ P P G FP+ PP+ G A
Sbjct: 174 GVTYPA--EPAPPGRTFPAARPPQDEPGFA 201
>05_01_0488 - 4070506-4072277,4072455-4072557
Length = 624
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 167 LTTGPQESDPMYEVMIGGWGNAKSVIRKNKPSPIR 271
L T Q MY V+ +GN +RKN PS ++
Sbjct: 60 LITHVQNFQQMYRVLAKRYGNVTGELRKNIPSSLQ 94
>04_04_0837 + 28547815-28547970,28548073-28548783
Length = 288
Score = 27.5 bits (58), Expect = 8.8
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Frame = -1
Query: 604 AGGV--TFPSGSPPRPEGVRFPSVS--PPRVSQGVAA*QSKL---LQVQSVALRFSRSLW 446
AGG+ P SPP G P+VS PPR + G+AA S L+ ++ LR +
Sbjct: 96 AGGIPTAIPISSPPTSSGGE-PAVSSSPPRGAAGIAAGVSGAVAELEEENARLRRENARL 154
Query: 445 HPSLCRLRR 419
L R RR
Sbjct: 155 ARELARARR 163
>02_03_0101 + 15233783-15234601
Length = 272
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 287 PEFLTEGNIVVFGFVGIAALSPLDARVKLFHSYLGLIP 400
PE T+G V+ + + + P+ RV+LF Y+ + P
Sbjct: 222 PEHTTDGMPVILESMALVSTPPVAKRVRLFGVYIDVPP 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,264,763
Number of Sequences: 37544
Number of extensions: 441623
Number of successful extensions: 1460
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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