Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40275
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11869| Best HMM Match : Excalibur (HMM E-Value=8)                   29   2.2  
SB_53619| Best HMM Match : GPS (HMM E-Value=2.4e-15)                   29   3.9  
SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)           28   5.1  
SB_933| Best HMM Match : ExoD (HMM E-Value=6)                          28   6.8  
SB_49030| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)                      28   6.8  
SB_45179| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_20027| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_11869| Best HMM Match : Excalibur (HMM E-Value=8)
          Length = 269

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = -3

Query: 515 GCRVTKQAATGAVGGTSIFKELVAPQLVQXXXXXTGKGSGSDQDMNGIASPSRPAEIMPL 336
           GC  + QA T A   T     +VAP           K + ++Q++  +AS S P E  P 
Sbjct: 2   GCSASNQAKTTATQPTVQTSSIVAPNNNTTTQSANPKPASNEQEIQPLASSSTPNE-QPK 60

Query: 335 SQRTQKP 315
              T +P
Sbjct: 61  HVPTSQP 67


>SB_53619| Best HMM Match : GPS (HMM E-Value=2.4e-15)
          Length = 457

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 420 RRSLHKLGCHKLLENRSATDCTCSSLLCYA 509
           RR     GCH    N + T+C C  +  YA
Sbjct: 226 RRGWSSSGCHLSFSNATITECKCDHMTNYA 255


>SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)
          Length = 225

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 271 VEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEPFPV-YYV 423
           + I + GI +  +   FWV + S  +  G     I    W+DP+P  V YY+
Sbjct: 1   LNIATSGITSAEKRMVFWVDFRSANLVLGSGATVIA--QWTDPDPLEVGYYI 50


>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
          Length = 555

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 263 PIRLKLKAPEFLTEGNIVVFGFVG-IAALSPLDARVKLFHSYLG 391
           P  ++ K P  L +G I+  GF+G ++AL      ++LF    G
Sbjct: 100 PYVIRPKGPRLLRQGTIMKAGFIGLVSALGVYACNLELFRRCAG 143


>SB_49030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 607 KAGGVTFPSGSPPRPEGVRFPSVSPPRVSQGVAA 506
           ++  +T P   PPR   +  P   PPR +Q V A
Sbjct: 60  RSNQITIPHTPPPRSHQIVIPHTPPPRSNQIVIA 93


>SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)
          Length = 969

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
 Frame = -2

Query: 507 RNKASCYRCSRWHFDFQGACGTPACADS-DVVN--WERFGIRPRYE-----WNSFTLASS 352
           +NK +C  C++     +  CGTP C +S D  N     +  RPR       WN FT    
Sbjct: 718 KNKFACEECTK----ARNGCGTPVCEESGDKGNRKMNLYSNRPRTRQTVKLWN-FTSCFG 772

Query: 351 GDNAAIPTNPKT 316
           G+   +P +  T
Sbjct: 773 GERGNLPDSAFT 784


>SB_45179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 304 GEYRGFWVRWDSGIISAGREGEAIPFISWSDPEPFPVYYVGVCTSWGAT 450
           GE+  +W+R  + +IS G   + I  +    P      YVGV   W A+
Sbjct: 147 GEFETYWMRISNVLISLGGNKDEIDNLKTKRPATRD--YVGVLQQWRAS 193


>SB_20027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 441 PACA-DSDVVNWERFGIRPRYEWNSFTLASSGDNAAIPTNPKTT 313
           P C  ++  V  +    RP+ EW S ++ +  D +A+P   KTT
Sbjct: 84  PTCTGNTPEVKCKTIVARPKREWASGSVPNEKDESALPDAIKTT 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,571,699
Number of Sequences: 59808
Number of extensions: 454598
Number of successful extensions: 1157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)