Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40275
         (610 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122199-1|AAM52711.1|  308|Drosophila melanogaster LD46156p pro...    96   3e-20
AE013599-3120|AAF46666.1|  296|Drosophila melanogaster CG10527-P...    96   3e-20
AY069859-1|AAL40004.1|  313|Drosophila melanogaster SD10415p pro...    38   0.011
AE013599-3342|AAF46805.1|  585|Drosophila melanogaster CG6698-PA...    38   0.011
DQ352451-1|ABD22987.1| 3790|Drosophila melanogaster Nipped-A pro...    30   2.8  
AY142217-1|AAN52145.1| 3803|Drosophila melanogaster transformati...    30   2.8  
AE013599-60|AAF57342.2| 3805|Drosophila melanogaster CG33554-PA,...    30   2.8  
AE013599-59|ABI31023.1| 3628|Drosophila melanogaster CG33554-PC,...    30   2.8  
AE013599-58|ABI31022.1| 3400|Drosophila melanogaster CG33554-PB,...    30   2.8  
AY122182-1|AAM52694.1|  311|Drosophila melanogaster LD39537p pro...    29   6.6  
AE014296-1569|AAF50330.2|  302|Drosophila melanogaster CG5194-PA...    29   6.6  
AY089673-1|AAL90411.1|  227|Drosophila melanogaster RH45888p pro...    28   8.7  
AE014297-227|AAF52042.1|  227|Drosophila melanogaster CG1161-PA,...    28   8.7  
AE014297-226|AAX52934.1|  263|Drosophila melanogaster CG1161-PB,...    28   8.7  

>AY122199-1|AAM52711.1|  308|Drosophila melanogaster LD46156p
           protein.
          Length = 308

 Score = 96.3 bits (229), Expect = 3e-20
 Identities = 40/78 (51%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
 Frame = +1

Query: 259 KPDKVEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEPFPVYYVGVCTS 438
           KP+  E+ +PGIL+ GE+RGFWVRW   +I+ GREG+A  F+S+     FPV +VG+CT 
Sbjct: 80  KPEVAEVPTPGILDAGEFRGFWVRWYDNVITVGREGDAAAFLSYDAGSLFPVNFVGICTG 139

Query: 439 WGATSSLKIEVP-PTAPV 489
           WGA+ +  I+ P P+APV
Sbjct: 140 WGASGTWLIDEPAPSAPV 157



 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 39/81 (48%), Positives = 54/81 (66%)
 Frame = +2

Query: 65  MDVATDDNLQYQFFPVSSGSVQFKVRAANDAHIALTTGPQESDPMYEVMIGGWGNAKSVI 244
           ++V T D L+YQFFP S G   FKVR+  DAH+ALT  P+E+ P++E+ +GGW N KSVI
Sbjct: 15  IEVNTPDKLEYQFFPASGGVFTFKVRSPKDAHLALTPAPEENGPIFEIFLGGWENTKSVI 74

Query: 245 RKNKPSPIRLKLKAPEFLTEG 307
           RK++  P   ++  P  L  G
Sbjct: 75  RKDRQKPEVAEVPTPGILDAG 95


>AE013599-3120|AAF46666.1|  296|Drosophila melanogaster CG10527-PA
           protein.
          Length = 296

 Score = 96.3 bits (229), Expect = 3e-20
 Identities = 40/78 (51%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
 Frame = +1

Query: 259 KPDKVEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEPFPVYYVGVCTS 438
           KP+  E+ +PGIL+ GE+RGFWVRW   +I+ GREG+A  F+S+     FPV +VG+CT 
Sbjct: 68  KPEVAEVPTPGILDAGEFRGFWVRWYDNVITVGREGDAAAFLSYDAGSLFPVNFVGICTG 127

Query: 439 WGATSSLKIEVP-PTAPV 489
           WGA+ +  I+ P P+APV
Sbjct: 128 WGASGTWLIDEPAPSAPV 145



 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 39/81 (48%), Positives = 54/81 (66%)
 Frame = +2

Query: 65  MDVATDDNLQYQFFPVSSGSVQFKVRAANDAHIALTTGPQESDPMYEVMIGGWGNAKSVI 244
           ++V T D L+YQFFP S G   FKVR+  DAH+ALT  P+E+ P++E+ +GGW N KSVI
Sbjct: 3   IEVNTPDKLEYQFFPASGGVFTFKVRSPKDAHLALTPAPEENGPIFEIFLGGWENTKSVI 62

Query: 245 RKNKPSPIRLKLKAPEFLTEG 307
           RK++  P   ++  P  L  G
Sbjct: 63  RKDRQKPEVAEVPTPGILDAG 83


>AY069859-1|AAL40004.1|  313|Drosophila melanogaster SD10415p
           protein.
          Length = 313

 Score = 37.9 bits (84), Expect = 0.011
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +2

Query: 125 VQFKVRAANDAHIAL--TTGPQESDPMYEVMIGGWGNAKSVIR 247
           ++F V  A DAHI L  T  P+ +D +YE++IG  GN  S IR
Sbjct: 78  LKFYVLTAMDAHILLSVTNHPRPNDRVYEIVIGAGGNTFSAIR 120


>AE013599-3342|AAF46805.1|  585|Drosophila melanogaster CG6698-PA
           protein.
          Length = 585

 Score = 37.9 bits (84), Expect = 0.011
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +2

Query: 125 VQFKVRAANDAHIAL--TTGPQESDPMYEVMIGGWGNAKSVIR 247
           ++F V  A DAHI L  T  P+ +D +YE++IG  GN  S IR
Sbjct: 78  LKFYVLTAMDAHILLSVTNHPRPNDRVYEIVIGAGGNTFSAIR 120


>DQ352451-1|ABD22987.1| 3790|Drosophila melanogaster Nipped-A protein.
          Length = 3790

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 399  RTFPSLLRRSLHKLGCHKLLENRSATDCTCSSLLCYAATP 518
            R F   L  + HKL  H+LL    A D T + L CY   P
Sbjct: 1271 RLFTIDLTNTYHKLFFHELLTLSEAEDATLAKLDCYKNVP 1310


>AY142217-1|AAN52145.1| 3803|Drosophila melanogaster
            transformation/transcription domain-associated protein
            protein.
          Length = 3803

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 399  RTFPSLLRRSLHKLGCHKLLENRSATDCTCSSLLCYAATP 518
            R F   L  + HKL  H+LL    A D T + L CY   P
Sbjct: 1333 RLFTIDLTNTYHKLFFHELLTLSEAEDATLAKLDCYKNVP 1372


>AE013599-60|AAF57342.2| 3805|Drosophila melanogaster CG33554-PA,
            isoform A protein.
          Length = 3805

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 399  RTFPSLLRRSLHKLGCHKLLENRSATDCTCSSLLCYAATP 518
            R F   L  + HKL  H+LL    A D T + L CY   P
Sbjct: 1335 RLFTIDLTNTYHKLFFHELLTLSEAEDATLAKLDCYKNVP 1374


>AE013599-59|ABI31023.1| 3628|Drosophila melanogaster CG33554-PC,
            isoform C protein.
          Length = 3628

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 399  RTFPSLLRRSLHKLGCHKLLENRSATDCTCSSLLCYAATP 518
            R F   L  + HKL  H+LL    A D T + L CY   P
Sbjct: 1179 RLFTIDLTNTYHKLFFHELLTLSEAEDATLAKLDCYKNVP 1218


>AE013599-58|ABI31022.1| 3400|Drosophila melanogaster CG33554-PB,
            isoform B protein.
          Length = 3400

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 399  RTFPSLLRRSLHKLGCHKLLENRSATDCTCSSLLCYAATP 518
            R F   L  + HKL  H+LL    A D T + L CY   P
Sbjct: 1009 RLFTIDLTNTYHKLFFHELLTLSEAEDATLAKLDCYKNVP 1048


>AY122182-1|AAM52694.1|  311|Drosophila melanogaster LD39537p
           protein.
          Length = 311

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -3

Query: 410 GKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSGLVYF 249
           G  +G    + G     +   + P+S++ Q+P    P  +PGLS S +  + +F
Sbjct: 112 GVSAGKPTQVAGCFKSPKKFTVSPISEQKQRPVPLCPRDVPGLSSSQIPCIKHF 165


>AE014296-1569|AAF50330.2|  302|Drosophila melanogaster CG5194-PA
           protein.
          Length = 302

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -3

Query: 410 GKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSGLVYF 249
           G  +G    + G     +   + P+S++ Q+P    P  +PGLS S +  + +F
Sbjct: 103 GVSAGKPTQVAGCFKSPKKFTVSPISEQKQRPVPLCPRDVPGLSSSQIPCIKHF 156


>AY089673-1|AAL90411.1|  227|Drosophila melanogaster RH45888p
           protein.
          Length = 227

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = -3

Query: 407 KGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSG 261
           + + S+     + +P+ PA   PL+++   P  +PP ++ G  +    G
Sbjct: 38  RNNNSNAQPAPVPAPAAPAAAAPLAKQVSAPTAAPPAKVIGQPVLAAPG 86


>AE014297-227|AAF52042.1|  227|Drosophila melanogaster CG1161-PA,
           isoform A protein.
          Length = 227

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = -3

Query: 404 GSGSDQDMNG----IASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSG 261
           G+ S+ + N     + +P+ PA   PL+++   P  +PP ++ G  +    G
Sbjct: 35  GTNSNNNSNAQPAPVPAPAAPAAAAPLAKQVSAPTAAPPAKVIGQPVLAAPG 86


>AE014297-226|AAX52934.1|  263|Drosophila melanogaster CG1161-PB,
           isoform B protein.
          Length = 263

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = -3

Query: 404 GSGSDQDMNG----IASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSG 261
           G+ S+ + N     + +P+ PA   PL+++   P  +PP ++ G  +    G
Sbjct: 35  GTNSNNNSNAQPAPVPAPAAPAAAAPLAKQVSAPTAAPPAKVIGQPVLAAPG 86


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,945,809
Number of Sequences: 53049
Number of extensions: 687586
Number of successful extensions: 2448
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2448
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2503659279
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)