Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40275
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       29   3.4  
AY724774-1|AAU21474.1|  750|Caenorhabditis elegans UNC-89-B prot...    29   3.4  
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated...    29   3.4  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    29   3.4  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    29   3.4  
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated...    29   3.4  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    29   3.4  
Z68215-2|CAA92451.2|  452|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z48006-4|CAA88048.1|  429|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical...    28   4.5  
Z72508-2|CAA96635.1|  284|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr...    28   6.0  
U58753-5|AAC24434.2|  348|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion...    28   6.0  
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion...    28   6.0  

>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/65 (29%), Positives = 26/65 (40%)
 Frame = -2

Query: 609  SKPEGLRFPPVALQDRRGYVFLPLALQGLAKGLPRNKASCYRCSRWHFDFQGACGTPACA 430
            S P  L  PP  + DRR    +PL      K L    +  Y C+ W     G      CA
Sbjct: 6365 SPPSRLMAPPQPVFDRRTNKVIPLLDPYAEKALDMRYSEQYACAPWF--SPGVVEKRYCA 6422

Query: 429  DSDVV 415
            ++D +
Sbjct: 6423 ENDTL 6427


>AY724774-1|AAU21474.1|  750|Caenorhabditis elegans UNC-89-B
           protein.
          Length = 750

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/65 (29%), Positives = 26/65 (40%)
 Frame = -2

Query: 609 SKPEGLRFPPVALQDRRGYVFLPLALQGLAKGLPRNKASCYRCSRWHFDFQGACGTPACA 430
           S P  L  PP  + DRR    +PL      K L    +  Y C+ W     G      CA
Sbjct: 444 SPPSRLMAPPQPVFDRRTNKVIPLLDPYAEKALDMRYSEQYACAPWF--SPGVVEKRYCA 501

Query: 429 DSDVV 415
           ++D +
Sbjct: 502 ENDTL 506


>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
            protein 89, isoform e protein.
          Length = 5992

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/65 (29%), Positives = 26/65 (40%)
 Frame = -2

Query: 609  SKPEGLRFPPVALQDRRGYVFLPLALQGLAKGLPRNKASCYRCSRWHFDFQGACGTPACA 430
            S P  L  PP  + DRR    +PL      K L    +  Y C+ W     G      CA
Sbjct: 5725 SPPSRLMAPPQPVFDRRTNKVIPLLDPYAEKALDMRYSEQYACAPWF--SPGVVEKRYCA 5782

Query: 429  DSDVV 415
            ++D +
Sbjct: 5783 ENDTL 5787


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
            protein 89, isoform a protein.
          Length = 6632

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/65 (29%), Positives = 26/65 (40%)
 Frame = -2

Query: 609  SKPEGLRFPPVALQDRRGYVFLPLALQGLAKGLPRNKASCYRCSRWHFDFQGACGTPACA 430
            S P  L  PP  + DRR    +PL      K L    +  Y C+ W     G      CA
Sbjct: 6365 SPPSRLMAPPQPVFDRRTNKVIPLLDPYAEKALDMRYSEQYACAPWF--SPGVVEKRYCA 6422

Query: 429  DSDVV 415
            ++D +
Sbjct: 6423 ENDTL 6427


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
            protein 89, isoform g protein.
          Length = 7122

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/65 (29%), Positives = 26/65 (40%)
 Frame = -2

Query: 609  SKPEGLRFPPVALQDRRGYVFLPLALQGLAKGLPRNKASCYRCSRWHFDFQGACGTPACA 430
            S P  L  PP  + DRR    +PL      K L    +  Y C+ W     G      CA
Sbjct: 6365 SPPSRLMAPPQPVFDRRTNKVIPLLDPYAEKALDMRYSEQYACAPWF--SPGVVEKRYCA 6422

Query: 429  DSDVV 415
            ++D +
Sbjct: 6423 ENDTL 6427


>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
            protein 89, isoform f protein.
          Length = 7441

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/65 (29%), Positives = 26/65 (40%)
 Frame = -2

Query: 609  SKPEGLRFPPVALQDRRGYVFLPLALQGLAKGLPRNKASCYRCSRWHFDFQGACGTPACA 430
            S P  L  PP  + DRR    +PL      K L    +  Y C+ W     G      CA
Sbjct: 5725 SPPSRLMAPPQPVFDRRTNKVIPLLDPYAEKALDMRYSEQYACAPWF--SPGVVEKRYCA 5782

Query: 429  DSDVV 415
            ++D +
Sbjct: 5783 ENDTL 5787


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/65 (29%), Positives = 26/65 (40%)
 Frame = -2

Query: 609  SKPEGLRFPPVALQDRRGYVFLPLALQGLAKGLPRNKASCYRCSRWHFDFQGACGTPACA 430
            S P  L  PP  + DRR    +PL      K L    +  Y C+ W     G      CA
Sbjct: 6365 SPPSRLMAPPQPVFDRRTNKVIPLLDPYAEKALDMRYSEQYACAPWF--SPGVVEKRYCA 6422

Query: 429  DSDVV 415
            ++D +
Sbjct: 6423 ENDTL 6427


>Z68215-2|CAA92451.2|  452|Caenorhabditis elegans Hypothetical
           protein C53B4.2 protein.
          Length = 452

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 335 IAALSPLDARVKLFHSYLGLIPNLSQFTTSE 427
           I A SPLD + K+F   +   P LS++TT E
Sbjct: 189 IKATSPLDDKSKMFMDRIVKKPYLSKYTTKE 219


>Z48006-4|CAA88048.1|  429|Caenorhabditis elegans Hypothetical
           protein F19C6.3 protein.
          Length = 429

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
 Frame = -2

Query: 492 CYRCSRW----HFDFQGA-CGTPACADSDVVNWERFGIRPR 385
           CYRC  W    H   + A C  P+C + D V  E+F   P+
Sbjct: 294 CYRCQCWDKKVHCSSEYATCEPPSCPEEDWVYNEKFNCCPK 334


>AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical
           protein F32D1.7 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 410 GKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSP 303
           G GSGS  D +G + P+R +  +P +     PR  P
Sbjct: 159 GSGSGSGNDSSGSSGPTRMSGQVPSTSGPPPPRPPP 194


>Z72508-2|CAA96635.1|  284|Caenorhabditis elegans Hypothetical
           protein F28H7.2 protein.
          Length = 284

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 565 PEGVRFPSVSPPRVSQGVAA*QSKLLQVQSVA 470
           PEG+R  SVSP  VS G +A    L + +S A
Sbjct: 182 PEGIRVNSVSPGAVSTGFSAVSRGLTEEKSKA 213


>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
            presynaptic activity protein.
          Length = 1409

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -1

Query: 586  PSGSPPR-PEGVRFPSVSPPR 527
            P G+PP+ PEG R P   PPR
Sbjct: 983  PLGAPPKVPEGARAPPPLPPR 1003


>U58753-5|AAC24434.2|  348|Caenorhabditis elegans Hypothetical
           protein W03B1.6 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 114 ETGKNWY*RLSSVATSMTLAMIVV 43
           ET + WY +LSS +T+M +A++ V
Sbjct: 15  ETFEKWYLKLSSTSTAMLIAILFV 38


>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
            defective protein3, isoform b protein.
          Length = 1408

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -1

Query: 586  PSGSPPR-PEGVRFPSVSPPR 527
            P G+PP+ PEG R P   PPR
Sbjct: 983  PLGAPPKVPEGARAPPPLPPR 1003


>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
            defective protein3, isoform a protein.
          Length = 1409

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -1

Query: 586  PSGSPPR-PEGVRFPSVSPPR 527
            P G+PP+ PEG R P   PPR
Sbjct: 983  PLGAPPKVPEGARAPPPLPPR 1003


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,236,972
Number of Sequences: 27780
Number of extensions: 326086
Number of successful extensions: 936
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)