Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40275
(610 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09430.1 68416.m01120 hypothetical protein 31 0.79
At5g13210.1 68418.m01516 expressed protein 30 1.4
At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta... 30 1.4
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta... 30 1.4
At5g44720.2 68418.m05479 molybdenum cofactor sulfurase family pr... 29 1.8
At5g44720.1 68418.m05480 molybdenum cofactor sulfurase family pr... 29 1.8
At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger) fa... 29 2.4
At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family... 29 3.2
At4g14840.1 68417.m02281 expressed protein 28 4.2
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi... 28 5.6
At3g07420.1 68416.m00884 asparaginyl-tRNA synthetase 2, cytoplas... 27 7.4
At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase / lon... 27 7.4
At2g24250.1 68415.m02896 F-box family protein contains Pfam:PF00... 27 9.7
>At3g09430.1 68416.m01120 hypothetical protein
Length = 247
Score = 30.7 bits (66), Expect = 0.79
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -1
Query: 583 SGSPPRPEGVRFPSVSPPRVSQGVAA*QSKLLQVQSVALRFSRSLWHPS--LCRLRRSK- 413
+G P+P +R+P+ + P + QSK+LQ+ + R L S ++ RS+
Sbjct: 39 AGKSPKPLAIRYPNYNSPPTPVSYPSPQSKILQIPNRNPNLGRGLNEESNRPSKMARSRI 98
Query: 412 LGKVRDQT 389
L +V+ +T
Sbjct: 99 LSEVKSET 106
>At5g13210.1 68418.m01516 expressed protein
Length = 673
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +2
Query: 170 TTGPQESDPMYEVMIGGWGNAKSVIRKNKPSPIRLKLKAPEFLTEGNIVVFGFVGIAALS 349
T+GP SDP + M+ + N+ V N P + K+ +L+ GN + F + +
Sbjct: 25 TSGP--SDPFMDAMVSNFNNSARVNNVNSPPMGYTENKSATYLSSGNPCLDFFFHVVPST 82
Query: 350 P 352
P
Sbjct: 83 P 83
>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +1
Query: 307 EYRGFWVRWDSGIISAGREGEAIPF----ISWSDPEP-FPVYYVGVCTSW 441
E++ +W+ G+IS G+ PF W DP+P V YVG+ +SW
Sbjct: 101 EFQSYWISIYDGLISIGK--GRYPFQNLVFKWQDPKPNCNVQYVGL-SSW 147
>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +1
Query: 307 EYRGFWVRWDSGIISAGREGEAIPF----ISWSDPEP-FPVYYVGVCTSW 441
E++ +W+ G+IS G+ PF W DP+P V YVG+ +SW
Sbjct: 101 EFQSYWISIYDGLISIGK--GRYPFQNLVFKWQDPKPNCNVQYVGL-SSW 147
>At5g44720.2 68418.m05479 molybdenum cofactor sulfurase family
protein weak similarity to molybdenum cofactor sulfurase
(LOS5/ABA3) [Arabidopsis thaliana] GI:15407262; contains
Pfam profiles PF03476: MOSC N-terminal beta barrel
domain, PF03473: MOSC domain
Length = 230
Score = 29.5 bits (63), Expect = 1.8
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
Frame = +2
Query: 125 VQFKVRAANDAHIALTTGPQESDPMYEVMIGGW---GNAKSVIRKNKPSPIRLKLKAPEF 295
V +K RA + T ES+ E + W ++ VIR SP+++ L P
Sbjct: 42 VNYKGRAYTQ-RVEPTLALVESELPKEAFLEDWEPTNDSLLVIRAPGMSPLKIPLTRPSS 100
Query: 296 LTEGNIVVFGFVGIAALSPLDARVKLFHSYLGLIPNLSQFTTSESAQAGVPQ 451
+ EG + ++ + G +A + K F YLG L +F + P+
Sbjct: 101 VAEG-VSMWEWSG-SAFDEGEEAAKWFSDYLGKQSRLVRFNKDTETRPSPPE 150
>At5g44720.1 68418.m05480 molybdenum cofactor sulfurase family
protein weak similarity to molybdenum cofactor sulfurase
(LOS5/ABA3) [Arabidopsis thaliana] GI:15407262; contains
Pfam profiles PF03476: MOSC N-terminal beta barrel
domain, PF03473: MOSC domain
Length = 308
Score = 29.5 bits (63), Expect = 1.8
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
Frame = +2
Query: 125 VQFKVRAANDAHIALTTGPQESDPMYEVMIGGW---GNAKSVIRKNKPSPIRLKLKAPEF 295
V +K RA + T ES+ E + W ++ VIR SP+++ L P
Sbjct: 42 VNYKGRAYTQ-RVEPTLALVESELPKEAFLEDWEPTNDSLLVIRAPGMSPLKIPLTRPSS 100
Query: 296 LTEGNIVVFGFVGIAALSPLDARVKLFHSYLGLIPNLSQFTTSESAQAGVPQ 451
+ EG + ++ + G +A + K F YLG L +F + P+
Sbjct: 101 VAEG-VSMWEWSG-SAFDEGEEAAKWFSDYLGKQSRLVRFNKDTETRPSPPE 150
>At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 373
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +3
Query: 420 RRSLHKLGCHKLLENRSATDCTCSSLLCYAATPWLTLGG 536
R LHK+ KL E R C C CYA LGG
Sbjct: 310 RSCLHKI---KLSEERMPVTCRCGYKFCYACGAQWKLGG 345
>At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 300
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 410 GKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIPG 285
G G S++D+N P P + P +TQ+ Y P + PG
Sbjct: 16 GPGQNSERDIN--QPPPPPPQSQPPPPQTQQQTYPPVMGYPG 55
>At4g14840.1 68417.m02281 expressed protein
Length = 555
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 308 NIVVFGFVGIAALS--PLDARVKLFHSYLGLIPNLSQFTTSESAQAGVPQAP 457
+I V G+ A+S P+D + F SYL + NL Q SE+ Q P
Sbjct: 294 HIYVSSMNGVIAVSHPPVDINPEEFDSYLNSLENLLQQQPSEAGQESSSSLP 345
>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
to proline-rich protein [Arabidopsis thaliana]
gi|6782442|gb|AAF28388; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 448
Score = 27.9 bits (59), Expect = 5.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 356 PAEIMPLSQRTQKPRYSPPLRIP 288
P E+ P ++ P+YSPP+ +P
Sbjct: 171 PLELPPFLKKPCPPKYSPPVEVP 193
>At3g07420.1 68416.m00884 asparaginyl-tRNA synthetase 2, cytoplasmic
/ asparagine-tRNA ligase 2 (SYNC2) nearly identical to
SP|Q9SW95; HMM hit: tRNA synthetases class II
Length = 638
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 206 VMIGGWGNAKSVIRKNKPSPIRLKLKAP 289
V+IGGW + ++KN P P + AP
Sbjct: 50 VVIGGWVKSARAVKKNSPPPPLPVVAAP 77
>At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase /
long-chain acyl-CoA synthetase nearly identical to acyl
CoA synthetase (MF45P) GI:1617268 from [Brassica napus]
Length = 665
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 384 YEWNSFTLASSGDNAAIPTNPKTTIFPSVKNSG 286
+ WN F+L + D A +P KT I + SG
Sbjct: 201 FSWNEFSLMGNLDEANLPRKRKTDICTIMYTSG 233
>At2g24250.1 68415.m02896 F-box family protein contains Pfam:PF00646
F-box domain
Length = 374
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 173 TGPQESDPMYEVMIGGWGNAKSVIRKNKPSPIRLKLK 283
T P +D E +GG G KS PSP++ +K
Sbjct: 91 TPPDAADASSEYFLGGLGQDKSNDHVELPSPLQCSVK 127
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,944,735
Number of Sequences: 28952
Number of extensions: 323106
Number of successful extensions: 1010
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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