Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40274
(609 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 135 4e-33
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 132 3e-32
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 106 2e-24
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 106 3e-24
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 104 1e-23
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 103 3e-23
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 66 4e-12
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 63 3e-11
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 58 1e-09
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 58 1e-09
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 54 2e-08
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 50 3e-07
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 47 2e-06
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 47 2e-06
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 46 3e-06
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 44 2e-05
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 40 2e-04
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 40 4e-04
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 1.6
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 27 1.6
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 2.1
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 27 2.1
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 25 6.5
SPAC824.03c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.5
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 6.5
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ... 25 6.5
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 25 6.5
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 25 8.7
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 25 8.7
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 8.7
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 135 bits (327), Expect = 4e-33
Identities = 61/107 (57%), Positives = 79/107 (73%)
Frame = +1
Query: 256 PLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPATINE 435
PLSYPD+ VIL+CF+VDSPDSL+N+ EKW EV HFC ++PI+LV K DLRNDP I E
Sbjct: 72 PLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPILLVACKADLRNDPKIIEE 131
Query: 436 LRKMKQEPVKPQEGRAMAEKINAFDIWNALPKSKEGVREVFENSNQS 576
L K Q PV +EG+A+A+KI A+ K+ EGVREVFE++ ++
Sbjct: 132 LSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFESATRA 178
Score = 128 bits (310), Expect = 5e-31
Identities = 57/64 (89%), Positives = 61/64 (95%)
Frame = +2
Query: 56 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 235
+R+KLVIVGDGACGKTCLLIVFSK FPEVYVPTVFENYVAD+EVDG+ VELALWDTAGQ
Sbjct: 5 LRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQ 64
Query: 236 EDYD 247
EDYD
Sbjct: 65 EDYD 68
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 132 bits (320), Expect = 3e-32
Identities = 59/104 (56%), Positives = 76/104 (73%)
Frame = +1
Query: 256 PLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPATINE 435
PLSYPD+ V+L+CFSVD+P+SL+N+ EKW EV HFC N+PI+LVG K DLRNDP TI E
Sbjct: 72 PLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPILLVGCKVDLRNDPKTIEE 131
Query: 436 LRKMKQEPVKPQEGRAMAEKINAFDIWNALPKSKEGVREVFENS 567
L K Q+P+ +EG+ +A+KI A+ K EGV EVFE +
Sbjct: 132 LSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNEVFETA 175
Score = 128 bits (309), Expect = 6e-31
Identities = 56/64 (87%), Positives = 61/64 (95%)
Frame = +2
Query: 56 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 235
+R+KLVIVGDGACGKTCLLIVFSK FPEVYVPTVFENYVAD+EVDG+ +ELALWDTAGQ
Sbjct: 5 LRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQ 64
Query: 236 EDYD 247
EDYD
Sbjct: 65 EDYD 68
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 106 bits (255), Expect = 2e-24
Identities = 46/112 (41%), Positives = 70/112 (62%)
Frame = +1
Query: 256 PLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPATINE 435
PLSYP TDV L+CFSV SP S EN+ EKW PEV H CP VP ++VG + DLR+DP+ +
Sbjct: 69 PLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVPCLIVGTQIDLRDDPSVQQK 128
Query: 436 LRKMKQEPVKPQEGRAMAEKINAFDIWNALPKSKEGVREVFENSNQSRITGP 591
L + Q P+ ++G +A ++ A +++G++ VF+ + + + P
Sbjct: 129 LARQHQHPLTHEQGERLARELGAVKYVECSALTQKGLKNVFDEAIVAALDPP 180
Score = 81.4 bits (192), Expect = 9e-17
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = +2
Query: 65 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 244
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDY 64
Query: 245 D 247
D
Sbjct: 65 D 65
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 106 bits (254), Expect = 3e-24
Identities = 49/115 (42%), Positives = 71/115 (61%)
Frame = +1
Query: 256 PLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPATINE 435
P+SY +IL+ F++DSPDSLEN+ KW E+ CPNVP ILVG K DLR+DP I E
Sbjct: 74 PMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCPNVPFILVGMKADLRSDPVAIEE 133
Query: 436 LRKMKQEPVKPQEGRAMAEKINAFDIWNALPKSKEGVREVFENSNQSRITGPEEE 600
+R+ Q VK Q+ +A++I A + +GV +VFE + ++ +T + E
Sbjct: 134 MRRRNQNFVKSQQAELVAQRIGARKYMECSSLTGDGVDDVFEAATRAALTVRDSE 188
Score = 105 bits (253), Expect = 4e-24
Identities = 47/64 (73%), Positives = 54/64 (84%)
Frame = +2
Query: 56 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 235
IR+KLV+VGDGACGKT LL VF+ FP YVPTVFENYV+D VDGK V+LALWDTAGQ
Sbjct: 7 IRRKLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQ 66
Query: 236 EDYD 247
E+Y+
Sbjct: 67 EEYE 70
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 104 bits (249), Expect = 1e-23
Identities = 48/72 (66%), Positives = 55/72 (76%), Gaps = 2/72 (2%)
Frame = +2
Query: 38 TGPMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DGKQVEL 211
+G + KKLV+VGDG CGKTCLLIVFS FPE YVPTVFENY+ DI + K +EL
Sbjct: 7 SGSKSETSKKLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIEL 66
Query: 212 ALWDTAGQEDYD 247
ALWDTAGQE+YD
Sbjct: 67 ALWDTAGQEEYD 78
Score = 103 bits (248), Expect = 2e-23
Identities = 50/102 (49%), Positives = 65/102 (63%)
Frame = +1
Query: 256 PLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPATINE 435
PLSYP+++VIL+CFS+D P SL N+ EKW PEV+HFCP PI+LVG K DLR D
Sbjct: 82 PLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPRTPIVLVGLKADLRKDRNATEV 141
Query: 436 LRKMKQEPVKPQEGRAMAEKINAFDIWNALPKSKEGVREVFE 561
LR PV Q+ +++A +NA + K GV EVF+
Sbjct: 142 LRTQGLTPVTYQQAQSVALSMNAPYV-ECSAKENTGVNEVFQ 182
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 103 bits (246), Expect = 3e-23
Identities = 45/72 (62%), Positives = 55/72 (76%)
Frame = +2
Query: 32 CFTGPMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVEL 211
CF I +K+VI+GDGA GKT LL VF+K FP+VY PT+FENY+ DI VDG +EL
Sbjct: 4 CFGSKKKPIYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIEL 63
Query: 212 ALWDTAGQEDYD 247
+LWDTAGQE+YD
Sbjct: 64 SLWDTAGQEEYD 75
Score = 80.6 bits (190), Expect = 2e-16
Identities = 45/100 (45%), Positives = 57/100 (57%)
Frame = +1
Query: 259 LSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPATINEL 438
LSY DT VI++CF+VDS DSLEN+ KW PEV CP V ++LV K DLR +E
Sbjct: 80 LSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCPGVKLVLVALKCDLRG----ADEE 135
Query: 439 RKMKQEPVKPQEGRAMAEKINAFDIWNALPKSKEGVREVF 558
+ + + +EG A A+KINA K GV E F
Sbjct: 136 QVDHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAF 175
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 66.1 bits (154), Expect = 4e-12
Identities = 27/61 (44%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Frame = +2
Query: 65 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 241
KL+++GD GK+CLL+ FS+D F ++ T+ ++ + IE+DGK+++L +WDTAGQE
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 70
Query: 242 Y 244
+
Sbjct: 71 F 71
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 63.3 bits (147), Expect = 3e-11
Identities = 26/61 (42%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Frame = +2
Query: 65 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 241
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + E++GK V+L +WDTAGQE
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 242 Y 244
+
Sbjct: 70 F 70
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 58.0 bits (134), Expect = 1e-09
Identities = 27/60 (45%), Positives = 38/60 (63%)
Frame = +2
Query: 65 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 244
KLV+VGDG GK+ L I + F + Y PT+ ++Y E+DG+ L + DTAGQE+Y
Sbjct: 10 KLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQEEY 69
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 58.0 bits (134), Expect = 1e-09
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +2
Query: 65 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 241
K+VI+GD GKTCL+ F +F Y T+ +++ D+ VD K V L LWDTAGQE
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 242 Y 244
+
Sbjct: 70 F 70
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 53.6 bits (123), Expect = 2e-08
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Frame = +2
Query: 47 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVD-GKQVELALW 220
+ I +KLV++GD A GK+ L++ F KDQF + T+ ++ + +D V+L +W
Sbjct: 10 VVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIW 69
Query: 221 DTAGQEDY 244
DTAGQE Y
Sbjct: 70 DTAGQERY 77
Score = 34.3 bits (75), Expect = 0.014
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 238 RLRSAAPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN 414
R +S AP+ Y + + ++ + + SLE + W E++ P + I L GNK DL
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEK-AKSWIKELQRQAPEGIVIALAGNKLDLAQ 134
Query: 415 DPATINE 435
+ + +
Sbjct: 135 ERRAVEK 141
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 50.0 bits (114), Expect = 3e-07
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Frame = +2
Query: 53 AIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 226
++RK KLV +G+ + GKT L+ F DQF Y T+ ++++ + ++ + V L LWDT
Sbjct: 8 SLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 67
Query: 227 AGQEDY 244
AGQE +
Sbjct: 68 AGQERF 73
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 47.2 bits (107), Expect = 2e-06
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +2
Query: 65 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 241
K++I+G+ GKT ++ + +F + Y T+ +++ ++ VD K V L LWDTAGQE
Sbjct: 10 KVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQER 69
Query: 242 Y 244
+
Sbjct: 70 F 70
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 47.2 bits (107), Expect = 2e-06
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +2
Query: 65 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 241
K V++GD GK+ LL+ F++++F T+ + +I +D K+++ +WDTAGQE
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 242 Y 244
Y
Sbjct: 72 Y 72
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 46.4 bits (105), Expect = 3e-06
Identities = 20/67 (29%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +2
Query: 47 MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 223
MA I+ +++ ++G + GK+ L + + ++ F E Y PT+ + +I+ G++ + D
Sbjct: 1 MAPIKSRRIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIID 60
Query: 224 TAGQEDY 244
TAGQ++Y
Sbjct: 61 TAGQDEY 67
Score = 25.8 bits (54), Expect = 5.0
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 286 LMCFSVDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRNDPATINE 435
++ +S+ S S E + + H VPI++VGNK DL A E
Sbjct: 82 VLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLHMQRAVTAE 132
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 43.6 bits (98), Expect = 2e-05
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Frame = +2
Query: 65 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDG-----KQVELALWDTA 229
K+V+ G GK+CLL F K+Q+ + TV ++ + I G K+++L +WDTA
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTA 70
Query: 230 GQEDY 244
GQE +
Sbjct: 71 GQEKF 75
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +2
Query: 65 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 241
K+ ++GD + GKT L++ + + F E T+ N++ I + ++ ++WD GQ +
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQRE 71
Query: 242 Y 244
+
Sbjct: 72 F 72
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 39.5 bits (88), Expect = 4e-04
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 65 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQE 238
KLV+VGDG GKT + +F + Y+ T+ E + + ++ +WDTAGQE
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQE 69
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1
Query: 286 LMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 411
++ F V S + +N+P W V+ C N+PI+L GNK D++
Sbjct: 86 IIMFDVTSRITYKNVPHWWRDLVR-VCENIPIVLCGNKVDVK 126
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = +2
Query: 26 LYCFTGPMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYV 151
L+C ++ +++VGD CGKT + + ++ E+++
Sbjct: 1175 LFCLVWRCLLAKEPVLLVGDTGCGKTTVCQILAECLHKELHI 1216
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +2
Query: 47 MAAIRKK--LVIVGDGACGKTCLL 112
+ I KK ++VGD A GKTC+L
Sbjct: 1863 ITCINKKWPCILVGDTATGKTCIL 1886
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = -1
Query: 228 AVSHRASSTCFPSTSMSAT*FSNTVGTYTSGN*SLLNTISR 106
A S+ ++S +PSTSMSA+ S + TS + S ++ SR
Sbjct: 500 ATSYSSASASYPSTSMSASLSSVHTSSATSSSKSSSSSSSR 540
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 286 LMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK-KDLRN 414
++C S E + W P + NVPI+L NK +DL N
Sbjct: 77 VICLVYSDNYSYERVSIFWLPYFRSLGVNVPIVLCENKSEDLDN 120
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -3
Query: 226 GIPQSQFHLFSIHFDVGNVILKHCRHVYFRELILAEH 116
G QS+ +IH + +++H ++ YF++L+ +H
Sbjct: 325 GSLQSEHTSLNIHTGLAETLVQHTKNNYFQKLLQLQH 361
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 313 DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 411
DS E + WTPE+ + V +I + +K +R
Sbjct: 367 DSKEQLLAYWTPEITNQPARVALISIPSKSTIR 399
>SPAC824.03c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 202 SGTGSVGYRWPRRLRSAAPLSYP-DTDVILMCFSVDSPDSLENI 330
S GS+G R+ R L + SYP DT IL C + SL+ +
Sbjct: 108 SNKGSIGPRFVRELEGSLS-SYPTDTLGILACLGSFTSSSLKTL 150
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.4 bits (53), Expect = 6.5
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +1
Query: 427 INELRKMKQEPVKPQEGRAMAEKINAF 507
+++ +K K+ P KP+E + + +N+F
Sbjct: 388 VDDNKKKKKGPAKPKEKATLGKTVNSF 414
>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 47 MAAIRKKLVIVGDGACGKT-CLLIVFSKDQFPEVYVPTVFENYVADIEV 190
M K L I+G G T C +FS++ + ++ E ++ DIEV
Sbjct: 214 MHCFHKLLQILGIREIGDTQCGFKLFSREAYQSIFPRMHVEGWIFDIEV 262
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 114 ISRHVLPHAPSPTITNFLRIAAIG 43
I H+LP+ TITNF R+ G
Sbjct: 188 IENHLLPNELPLTITNFFRLGTPG 211
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 25.0 bits (52), Expect = 8.7
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -3
Query: 274 YLDTRAAQP-IVIFLASGIPQSQFHLFSIHFDVGNVILKHCRHVYFRELILAEH 116
Y A P ++I G+P Q H H ++GN + H + Y I AE+
Sbjct: 477 YAQHSVANPSLLIHQIHGLPSEQVHGLLSHTELGNAM--HNQPTYNESSIAAEN 528
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 25.0 bits (52), Expect = 8.7
Identities = 7/26 (26%), Positives = 16/26 (61%)
Frame = +3
Query: 138 RKYTCRQCLRITLPTSKWMENKWNWL 215
++++CRQ + + S WM+ +W+
Sbjct: 455 QRFSCRQLYGLAVQASMWMQIPCDWV 480
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 364 RSALPQGSTSLGCSRANPASPP 299
+SA Q TSLG + NP PP
Sbjct: 463 KSAENQPPTSLGINNGNPVMPP 484
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,800
Number of Sequences: 5004
Number of extensions: 53229
Number of successful extensions: 217
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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