Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40274
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    25   0.77 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.4  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           21   7.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.4  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 106 SADSVQQGSIPG-SIRADSV*ELRCRHRSGWKTSGTGSVGYR 228
           +A S   G  P  +I ADS  EL  R R G+K +G   + Y+
Sbjct: 168 TAASTVLGFFPALNIVADSFIELIRRQRVGYKVTGFEELAYK 209


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 599 SSSGPVMRLWLLFSNTS-RTPSLLFGRAFQISNALIFSAIARP 474
           S+ G  M +++  S  S RTPS LF     ISN L+   ++ P
Sbjct: 66  SAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCMSPP 108


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 96  PHAPSPTITNFLRIAAIGPVKQYNADNY 13
           P  P PT+T+    +A  P+K+ + D+Y
Sbjct: 181 PEPPVPTVTSACVGSAYTPLKEDHDDHY 208


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +1

Query: 385  LVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAE 492
            +V +++ +  DP+     R    +P   Q+G+A A+
Sbjct: 978  VVQSQQPIMTDPSPFKRGRYTPPQPANAQQGQAQAQ 1013


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 189 WMENKWNWLCGIPLAKKITIGCAALVSRY 275
           W+ N W   C    AKK+T    ++ + Y
Sbjct: 83  WLHNIWRPDCFFKNAKKVTFHEMSIPNHY 111


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -1

Query: 144  TSGN*SLLNTISRHVLPHAPSPTITNFLRIAAIGPVKQYNADN 16
            T G+ ++ + +  H  PH+P  T+T     +    V+ +  DN
Sbjct: 1351 TFGHDTVTHQLIVHAPPHSPQITLTATTTNSLTMKVRPHPTDN 1393


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 5/19 (26%), Positives = 14/19 (73%)
 Frame = +1

Query: 451 QEPVKPQEGRAMAEKINAF 507
           ++P++PQ+  ++ EK+  +
Sbjct: 102 EDPIQPQQAASVVEKLGDY 120


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 550 HVHLPCFLAEHSRYQ 506
           H + P FL++HSR Q
Sbjct: 121 HDNSPSFLSDHSRDQ 135


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 298 SVDSPDSLENIPEKWTPEVKHFCPNVPIILV 390
           S+  P S +N+P+    +     P +P+I V
Sbjct: 763 SIPPPPSAQNVPQNTNSQAIPRIPILPMIPV 793


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,539
Number of Sequences: 438
Number of extensions: 3217
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)