Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40273
         (684 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54L75 Cluster: Putative uncharacterized protein; n=7; ...    34   2.8  
UniRef50_Q23MH0 Cluster: Putative uncharacterized protein; n=1; ...    33   4.9  
UniRef50_Q11SW9 Cluster: ATP-dependent DNA helicase; n=1; Cytoph...    33   8.6  

>UniRef50_Q54L75 Cluster: Putative uncharacterized protein; n=7;
           Dictyostelium discoideum|Rep: Putative uncharacterized
           protein - Dictyostelium discoideum AX4
          Length = 912

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 20/70 (28%), Positives = 37/70 (52%)
 Frame = -1

Query: 414 SNKLSKLINFSVETFYTKLLPDCHSSSLNSDMRIVYHSNCWQ*VGSTPGNGEPLLVDKGK 235
           +NK+    N +++ F  ++ P C    +NS  R++Y+++ +Q  G  P   +P + D+G 
Sbjct: 128 ANKIVTPYNINLDQFTMRIQPGCGDLIINSGSRVIYNAS-YQ-TGDIP--NKPTIDDQGN 183

Query: 234 *KIQAFRLVN 205
             IQ   L N
Sbjct: 184 ITIQGSNLYN 193


>UniRef50_Q23MH0 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 457

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 18/37 (48%), Positives = 23/37 (62%)
 Frame = -1

Query: 399 KLINFSVETFYTKLLPDCHSSSLNSDMRIVYHSNCWQ 289
           +LINF  E  Y     DC SSSL+SD+RI+   +C Q
Sbjct: 128 QLINFQFEGTYQGC--DCTSSSLSSDLRIIQIGSCSQ 162


>UniRef50_Q11SW9 Cluster: ATP-dependent DNA helicase; n=1; Cytophaga
           hutchinsonii ATCC 33406|Rep: ATP-dependent DNA helicase
           - Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB
           9469)
          Length = 634

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 311 YIIQIVGSKLALPLAMVSRCSSTRANKK-FRHSGLLTGQTLQNSSKP 174
           Y+++  G   A P  +  RC S   NK+ + H+ ++  QTLQ  + P
Sbjct: 546 YVLEYFGEYNAAPCGICDRCISKARNKEYYDHTAMVVQQTLQTKNIP 592


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 677,719,940
Number of Sequences: 1657284
Number of extensions: 13260180
Number of successful extensions: 24785
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24781
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)