Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40273
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|ch...    27   2.5  
SPAC589.11 |mug82||translation release factor |Schizosaccharomyc...    27   3.3  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   4.4  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   7.7  

>SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 333

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 388 VNKFG*FITCTIL*VSMVRLLPYFHGQLYNIIKTSYTL 501
           + K G   TCT L + ++   P+ HG L   +KT+  L
Sbjct: 183 IEKNGILDTCTQLSIPIIAYAPFCHGLLTGRVKTAEDL 220


>SPAC589.11 |mug82||translation release factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 182

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 444 SNHAHLEYGASNKLSKLINFSVETFYTKLLP 352
           S H ++E  A NK+S L+N S ET Y    P
Sbjct: 116 SQHKNIE-DALNKISDLLNKSAETLYVPDTP 145


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 178 LLLF*SVWPVNKPECLNFLFA 240
           LL F ++ PVNK E L F+FA
Sbjct: 612 LLCFFTILPVNKKESLLFIFA 632


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 143 RVLFNCVH-SFKVYCYFEVFGQLTSLNA*IFYLPL 244
           ++LF+ ++ S +VY  F  +  LTSL   ++Y PL
Sbjct: 274 QILFSLLYFSSEVYLSFVFWSVLTSLGLLVWYFPL 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,065
Number of Sequences: 5004
Number of extensions: 58784
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)