Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40273
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81585-6|CAB04684.2|  482|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z50797-4|CAA90674.1|  339|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z83218-4|CAB05690.2|  706|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z81527-3|CAB04271.1|  296|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z81585-6|CAB04684.2|  482|Caenorhabditis elegans Hypothetical
           protein T05E12.6a protein.
          Length = 482

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
 Frame = +2

Query: 386 KLISLDNLLLAPYSK*AWLDYYLISMDNYTI*LKLPILLAGGD-IHNVVRGLIKFLIPGG 562
           KL + D  +  P +  A +  Y+++ DN T  +++   L   + + +V   L  F+ PGG
Sbjct: 55  KLYNCDYQINVPQNYSARVHLYVVTNDNTTAPVQVTDQLGRSEEVQSVKNTLFFFISPGG 114

Query: 563 ISPLNSGN---FFGFI 601
              L++GN    FGF+
Sbjct: 115 KIQLSTGNREVGFGFV 130


>Z50797-4|CAA90674.1|  339|Caenorhabditis elegans Hypothetical
           protein T22H6.3 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -1

Query: 177 TLKLCTQLNNTLKVSVIFLLITVAYQSH*LCIGELQML*QHWEYTYSTQC 28
           +L +C+    TLK S+ F LI V   S  +CI  L +   H+ Y Y   C
Sbjct: 71  SLSICSDGPFTLKKSIGFPLIAVYCASFGMCISLLAL---HFYYRYIAVC 117


>Z83218-4|CAB05690.2|  706|Caenorhabditis elegans Hypothetical
           protein C31A11.7 protein.
          Length = 706

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 369 KKSQLKS**VWIIYYLHHTL 428
           K SQ+KS   WII+Y+H  L
Sbjct: 339 KSSQIKSPLTWIIFYMHRYL 358


>Z81527-3|CAB04271.1|  296|Caenorhabditis elegans Hypothetical
           protein F35E12.3 protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 291 ANNLNDILYACPSSEMNYGNQVITL 365
           +NNL  +L  C S  +NY N+V+++
Sbjct: 241 SNNLESVLIQCCSMNINYINEVVSV 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,904,734
Number of Sequences: 27780
Number of extensions: 326910
Number of successful extensions: 595
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)