Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40273
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17245.1 68417.m02593 zinc finger (C3HC4-type RING finger) fa...    29   3.8  
At2g02780.1 68415.m00221 leucine-rich repeat transmembrane prote...    28   5.0  
At4g33565.1 68417.m04770 zinc finger (C3HC4-type RING finger) fa...    27   8.8  

>At4g17245.1 68417.m02593 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 166

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 134 ETLRVLFNCVHSFKVYC 184
           +TLRVL  C H F VYC
Sbjct: 113 DTLRVLERCKHGFHVYC 129


>At2g02780.1 68415.m00221 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 753

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 402 SKLINFSVE-TFYTKLLPDCHSSSLNSDMRIVYHSNCWQ*VGS 277
           SK+I   V     T  LP C+SS   S+  +++  NC   +G+
Sbjct: 272 SKIITLDVSHNLLTGKLPSCYSSKSFSNQTVLFSFNCLSLIGT 314


>At4g33565.1 68417.m04770 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 204

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 134 ETLRVLFNCVHSFKVYC 184
           ETLR+L  C H+F +YC
Sbjct: 65  ETLRLLPKCKHAFHLYC 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,737,959
Number of Sequences: 28952
Number of extensions: 297652
Number of successful extensions: 686
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)