Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40272
         (592 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF242296-1|AAF59842.1| 1619|Drosophila melanogaster mechanosenso...    29   4.7  
AE014134-916|AAF52248.3| 1619|Drosophila melanogaster CG11020-PA...    29   4.7  
AE014134-915|AAS64642.1| 1712|Drosophila melanogaster CG11020-PB...    29   4.7  

>AF242296-1|AAF59842.1| 1619|Drosophila melanogaster mechanosensory
           transduction channelNOMPC protein.
          Length = 1619

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 39  TFLEVAVVFCAESGHKIYRFKVIHNINPTHLTSHMN 146
           T LE A  +CA +G+     ++I ++NPT +   MN
Sbjct: 619 TALETAFHYCAVAGNNDVLMEMISHMNPTDIQKAMN 654


>AE014134-916|AAF52248.3| 1619|Drosophila melanogaster CG11020-PA,
           isoform A protein.
          Length = 1619

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 39  TFLEVAVVFCAESGHKIYRFKVIHNINPTHLTSHMN 146
           T LE A  +CA +G+     ++I ++NPT +   MN
Sbjct: 619 TALETAFHYCAVAGNNDVLMEMISHMNPTDIQKAMN 654


>AE014134-915|AAS64642.1| 1712|Drosophila melanogaster CG11020-PB,
           isoform B protein.
          Length = 1712

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 39  TFLEVAVVFCAESGHKIYRFKVIHNINPTHLTSHMN 146
           T LE A  +CA +G+     ++I ++NPT +   MN
Sbjct: 619 TALETAFHYCAVAGNNDVLMEMISHMNPTDIQKAMN 654


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,225,521
Number of Sequences: 53049
Number of extensions: 404493
Number of successful extensions: 647
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2379510885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)