Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40272
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78417-12|CAO78731.1|  318|Caenorhabditis elegans Hypothetical p...    29   1.9  
Z78417-11|CAE17739.1|  294|Caenorhabditis elegans Hypothetical p...    29   1.9  
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AL110487-13|CAB54429.2|  268|Caenorhabditis elegans Hypothetical...    27   10.0 
AF456253-1|AAL59611.1|  268|Caenorhabditis elegans secreted 2-im...    27   10.0 

>Z78417-12|CAO78731.1|  318|Caenorhabditis elegans Hypothetical
           protein C35C5.10b protein.
          Length = 318

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +3

Query: 21  RSLAKITFLEV-AVVFCAESGHKIYRFKVIHNINPTHLTSHMNLMIKSL 164
           R++++   L V +++F AE  +K+     I  +NP H+T+ M LM+ ++
Sbjct: 88  RNVSRYVILTVYSLIFGAELAYKMISRTGIFLLNPCHVTTTMQLMLLTM 136


>Z78417-11|CAE17739.1|  294|Caenorhabditis elegans Hypothetical
           protein C35C5.10a protein.
          Length = 294

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +3

Query: 21  RSLAKITFLEV-AVVFCAESGHKIYRFKVIHNINPTHLTSHMNLMIKSL 164
           R++++   L V +++F AE  +K+     I  +NP H+T+ M LM+ ++
Sbjct: 64  RNVSRYVILTVYSLIFGAELAYKMISRTGIFLLNPCHVTTTMQLMLLTM 112


>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical
           protein F18C12.1 protein.
          Length = 4171

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
 Frame = +3

Query: 18  VRSLAKITF-LEVAVVFCAESGHKIYRFKVI--------HNINPTHLTSHMNLMIKSLFA 170
           VR L  + F +   ++ CA +G K YRF VI        + I+   + S  +LM++   A
Sbjct: 546 VRQLISLGFNIPSKIMSCANNGEKYYRFGVILKQIAHFYNTIDQQMIPSQQSLMLEEAIA 605

Query: 171 FGNLRI 188
           F  L I
Sbjct: 606 FEKLVI 611


>AL110487-13|CAB54429.2|  268|Caenorhabditis elegans Hypothetical
           protein Y39E4B.8 protein.
          Length = 268

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 347 YWYYVKVLEEPMPS-NKLPKKGIKI 418
           Y  Y+KVLE P+PS + L KK  K+
Sbjct: 128 YAVYLKVLEPPLPSPSSLQKKSTKL 152


>AF456253-1|AAL59611.1|  268|Caenorhabditis elegans secreted
           2-immunoglobulin-domainprotein ZIG-8 protein.
          Length = 268

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 347 YWYYVKVLEEPMPS-NKLPKKGIKI 418
           Y  Y+KVLE P+PS + L KK  K+
Sbjct: 128 YAVYLKVLEPPLPSPSSLQKKSTKL 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,228,591
Number of Sequences: 27780
Number of extensions: 237355
Number of successful extensions: 431
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)