Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40272
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   5.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   5.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   5.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   5.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   6.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.0  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 573 IHNR*NLTEHFMNLKINNDRFFLFYS*KHLE 481
           IHN  N   ++ N   NN+   L+Y+  ++E
Sbjct: 90  IHNNNNYKYNYNNNNYNNNCKKLYYNINYIE 120


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 573 IHNR*NLTEHFMNLKINNDRFFLFYS*KHLE 481
           IHN  N   ++ N   NN+   L+Y+  ++E
Sbjct: 90  IHNNNNYKYNYNNNNYNNNCKKLYYNINYIE 120


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 573 IHNR*NLTEHFMNLKINNDRFFLFYS*KHLE 481
           IHN  N   ++ N   NN+   L+Y+  ++E
Sbjct: 90  IHNNNNYKYNYNNNNYNNNCKKLYYNINYIE 120


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 573 IHNR*NLTEHFMNLKINNDRFFLFYS*KHLE 481
           IHN  N   ++ N   NN+   L+Y+  ++E
Sbjct: 90  IHNNNNYKYNYNNNNYNNNCKKLYYNINYIE 120


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 104 YS*YKSHTSNQSYEFDDKKPICVREPQN 187
           Y  YK   SN++Y ++ K+     +P++
Sbjct: 176 YDRYKEEESNENYNWEHKETHIDWQPED 203


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +2

Query: 326 ITKNIQKYWYYVKVLEEPMPSNKLPK 403
           +TK + +YW   +   +P+  N++ K
Sbjct: 340 LTKFVSEYWMETRGFLQPVCQNEMNK 365


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 367 YFNIIPIFLYILSNR 323
           + +I+PIFLY L  +
Sbjct: 146 FLSILPIFLYALGEQ 160


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 367 YFNIIPIFLYILSNR 323
           + +I+PIFLY L  +
Sbjct: 184 FLSILPIFLYALGEQ 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,960
Number of Sequences: 438
Number of extensions: 3047
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)