Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40271
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac...    36   0.005
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz...    36   0.006
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p...    28   1.3  
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    26   3.9  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    26   5.2  
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    25   6.8  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.0  
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    25   9.0  

>SPBC16E9.09c |||COPII vesicle coat component
           Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
 Frame = +2

Query: 254 VSFTSSTPGEHVICMYSNST-SWFSGSQLRVHLDIQVGEHAVDYANVAPKGK-LTE---- 415
           V FT++  G H IC  S S  +WFS ++ R+H+D+   +     A+   + K LT+    
Sbjct: 91  VRFTTTNEGTHRICYLSTSDGAWFSSTKTRLHVDLASDDKYNLIASSEDEAKDLTDRVAA 150

Query: 416 LQLRIRQLLGQ 448
           L  R+  +LG+
Sbjct: 151 LNTRLESILGE 161


>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 1/108 (0%)
 Frame = +2

Query: 257 SFTSSTPGEHVICMYSNSTSWFSGSQL-RVHLDIQVGEHAVDYANVAPKGKLTELQLRIR 433
           SFT   PG+++ C Y+++    S   L  VH  I + +  +D AN    GK       +R
Sbjct: 82  SFTVKNPGKYMYCFYNDALDGESKEVLFNVHGVIYISDEDLD-ANNPLLGK-------VR 133

Query: 434 QLLGQVHQITKXXXXXXXXXXXXXXXXXAPTSGCSWWSLLQTGVLVII 577
           QL   + ++                   +      WWS+LQT +LV +
Sbjct: 134 QLHDTISKVKHEQEYFVARERIHRNTAESTNDRVKWWSILQTVILVSV 181


>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 392

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 78  CFIEEIPDDTTVI-VNYKVELYDPKSGGFMQTTPGIGMHV 194
           C++ ++ DDT ++ +NY +  Y PK     Q   GI + V
Sbjct: 49  CYMFKLMDDTGIVELNYSLSKYSPKFEMLRQLQLGISVFV 88


>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 84  IEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDPNDRILLSR 233
           I  + DD T+I+ +++    P   G+  ++PGI +     +PN  I+  R
Sbjct: 157 IASVGDDCTLII-WRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGER 205


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 87  EEIPDDTTVIVNYKVELYDPKSGGF 161
           +++ DD     NYKV L   KSGGF
Sbjct: 820 QQLIDDFHTNENYKVFLLSTKSGGF 844


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 412 RTSTQD*TVAGSSTPDHQGAGLPEAKRRAFPATSGSTNQRVLLVEFATD 558
           + S ++   AGS++P ++   +P A+    P  SGS ++     EFA D
Sbjct: 226 KESEENLAEAGSASPMYKLKTVPNARPVTGPRASGSDDELDYDEEFADD 274


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -3

Query: 610 SSWRCLICQVTD--DDKDTCL*QTPP 539
           S+W C IC+ T+  D+K   L   PP
Sbjct: 44  STWTCSICEATNHIDEKGDILDYRPP 69


>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 257 RHSFQRIDSRQQYSIIRIADFNVHAYAR 174
           +H FQR+    +  II I D+ V +Y R
Sbjct: 325 QHMFQRLKEGYRNIIIAIVDYGVISYIR 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,655,622
Number of Sequences: 5004
Number of extensions: 53392
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)