Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40271
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1385 + 26189034-26189294,26189427-26189636,26191016-261910... 34 0.11
03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312 33 0.14
01_01_0934 + 7374381-7374652,7375339-7375864 28 5.3
09_04_0640 - 19166953-19167285,19167631-19168449,19169057-191691... 28 7.0
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 28 7.0
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065... 28 7.0
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 28 7.0
10_07_0053 - 12406958-12407011,12407012-12407168,12407280-124074... 27 9.3
02_05_0873 - 32372143-32372287,32372678-32372754,32372863-323730... 27 9.3
01_06_0900 - 32841880-32842078,32842179-32842300,32842621-328428... 27 9.3
>07_03_1385 +
26189034-26189294,26189427-26189636,26191016-26191092,
26191196-26191340
Length = 230
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/112 (18%), Positives = 47/112 (41%)
Frame = +2
Query: 251 NVSFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVGEHAVDYANVAPKGKLTELQLRI 430
N +FT++ G+++ C ++ + D + G A D++NVA KG++ +++ +
Sbjct: 106 NFAFTATEAGDYLACFWAPDHK--PPVSIGFEFDWRSGVAAKDWSNVAKKGQVDVMEMEL 163
Query: 431 RQLLGQVHQITKXXXXXXXXXXXXXXXXXAPTSGCSWWSLLQTGVLVIIGYL 586
++L + I + S +W L G+ + + L
Sbjct: 164 KKLEETIKSIHEEMFYLREREEEMQNLNKQTNSRMAWLGFLSLGICLSVAGL 215
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 9 LVIGLLADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDP 146
L++ A AL F + G KC +EI ++ V+ Y V DP
Sbjct: 26 LLLSAAPRTARALRFDLESGHTKCISDEIKVNSMVVGKYHVVGPDP 71
>03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312
Length = 232
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/70 (24%), Positives = 38/70 (54%)
Frame = +2
Query: 251 NVSFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVGEHAVDYANVAPKGKLTELQLRI 430
N +FT+S G+++ C ++ + + D + G A D+ NVA KG++ +++ +
Sbjct: 108 NFAFTASEAGDYLACFWAPDHR--PTATVGFEFDWRSGVSARDWTNVAKKGQVDMMEVEL 165
Query: 431 RQLLGQVHQI 460
++L ++ I
Sbjct: 166 KKLEDTINSI 175
>01_01_0934 + 7374381-7374652,7375339-7375864
Length = 265
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Frame = +2
Query: 14 DRIACRLCFSFVLPHSRRRTKMF------YRRN-T*RYHSYSKLQSRVIRSEIW 154
+R RLC F PH+++ + F Y+RN T H LQS + +++W
Sbjct: 129 ERTLHRLCTDFFTPHAKQVVQEFMSTCSTYQRNKTEHLHPAGLLQSLSVPTQVW 182
>09_04_0640 -
19166953-19167285,19167631-19168449,19169057-19169163,
19170070-19170154
Length = 447
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 47 VLPHSRRRTKMFYRRNT*RYHSYSKLQSR 133
V+P RRR + RRN RY S +KL R
Sbjct: 10 VMPTRRRRQRRRRRRNRHRYRSIAKLGKR 38
>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 558 VCSKLHQEHPLVGAS*CCR 502
+CS LH++H AS CCR
Sbjct: 1023 ICSSLHRDHHTSQASRCCR 1041
>03_03_0258 -
15905847-15905990,15906088-15906244,15906374-15906504,
15906991-15907126,15907193-15907464,15907874-15908169,
15908279-15908646,15908922-15908987,15909064-15909129,
15909226-15909297,15909391-15909459,15909549-15909620,
15909708-15909776,15909874-15909945,15910046-15910178,
15911223-15911361
Length = 753
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 306 LEYMHITCSPGVLDVN 259
LEYMH TCSP ++ N
Sbjct: 564 LEYMHETCSPSIIHKN 579
>03_03_0008 -
13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 450 YTRSPRSRLTRGKEKSVSGNIRKHQPAGA-PGGVCYRQVSLSSSVT 584
YTRS S L R + S++ + RK Q +G GG C V L++ T
Sbjct: 159 YTRSRVSSLRRSRS-SLNTDTRKAQDSGKLSGGTCLASVDLAADGT 203
>10_07_0053 -
12406958-12407011,12407012-12407168,12407280-12407410,
12407592-12407727,12407953-12408224,12408604-12408893,
12408984-12409285,12409359-12409424,12409506-12409571,
12409855-12409926,12410013-12410084,12410207-12410281,
12410367-12410438,12410531-12410663,12411556-12411655
Length = 665
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -1
Query: 306 LEYMHITCSPGVLDVNETFLPTNRLETTVF--YHSDRGL 196
LEY+H CSP + +++ F +N L T F + SD GL
Sbjct: 506 LEYLHEICSPSI--IHKNFKSSNILLDTEFNPHVSDAGL 542
>02_05_0873 -
32372143-32372287,32372678-32372754,32372863-32373072,
32374645-32374869
Length = 218
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 33 CASALYFHIAEGERKCFIEEIPDDTTVIVNY 125
CA A++ + + KC EEI + V+ +Y
Sbjct: 28 CAEAVWLDLPQSGTKCVSEEIQSNVVVLADY 58
>01_06_0900 -
32841880-32842078,32842179-32842300,32842621-32842841,
32843086-32843224,32843350-32843576,32843677-32843788,
32843863-32844063,32845349-32845525
Length = 465
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 530 GCSWWSLLQTGVLVIIGYLADETS 601
G +WW G+LV+ LA ETS
Sbjct: 6 GAAWWCACAVGMLVVGACLAGETS 29
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,596,803
Number of Sequences: 37544
Number of extensions: 370104
Number of successful extensions: 901
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -