Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40271
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4813| Best HMM Match : EMP24_GP25L (HMM E-Value=3.9e-13)           120   7e-28
SB_17502| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_11345| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_42241| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_13923| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_13226| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30)                  27   9.5  

>SB_4813| Best HMM Match : EMP24_GP25L (HMM E-Value=3.9e-13)
          Length = 348

 Score =  120 bits (290), Expect = 7e-28
 Identities = 59/111 (53%), Positives = 73/111 (65%), Gaps = 2/111 (1%)
 Frame = +2

Query: 257 SFTSSTPGEHVICMYSNSTSW--FSGSQLRVHLDIQVGEHAVDYANVAPKGKLTELQLRI 430
           +FTS TPGEHVIC++SNST W  ++G +LR+HLDIQVGEHA DYA +A K KLTELQLRI
Sbjct: 222 TFTSHTPGEHVICLHSNSTRWSLWAGGRLRIHLDIQVGEHANDYAQIAAKDKLTELQLRI 281

Query: 431 RQLLGQVHQITKXXXXXXXXXXXXXXXXXAPTSGCSWWSLLQTGVLVIIGY 583
           RQLL QV QI+K                 +      WW+L QT +L+  G+
Sbjct: 282 RQLLDQVEQISKEQNYQRFREERFRMTSESTNQRVLWWALAQTVILLATGF 332



 Score =  103 bits (246), Expect = 2e-22
 Identities = 45/79 (56%), Positives = 58/79 (73%)
 Frame = +3

Query: 15  IGLLADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHV 194
           IG +     ALYFH+ E E+KCFIEEIPD+T VI  YK +LYD     F+ ++PGIGMHV
Sbjct: 141 IGYMLGNVQALYFHMGETEKKCFIEEIPDETMVIGKYKTQLYDENIKDFLPSSPGIGMHV 200

Query: 195 EVRDPNDRILLSRVYSLEG 251
           EV+DPN +I++S+ YS EG
Sbjct: 201 EVKDPNGKIIMSKYYSSEG 219


>SB_17502| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 36  ASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYD-PKSGGFMQTTPGIGMHV 194
           AS+L F ++ G RKC  EE+  D  V+V  +  L D P+    ++ T   G HV
Sbjct: 78  ASSLSFTLSSGNRKCLKEEVHKD--VLVTGEFTLSDAPQQKTNLKVTDSTG-HV 128


>SB_11345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 243

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 39  SALYFHIAEGERKCFIEEIPDDTTVIVNYKVELY 140
           S   F +  G+R CF E I  + T+ V Y+V  Y
Sbjct: 33  SGFTFRVDPGKRDCFYETIKRNVTLDVEYQVCAY 66


>SB_42241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 49

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 492 KSVSGNIRKHQPAGAPGGVCYRQVSLSSSVTWQMRH 599
           KSV GNI  +   G   G   R V L  +V W++ +
Sbjct: 13  KSVQGNIEVYMDGGVRLGTDARSVFLGRTVIWELAY 48


>SB_13923| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +3

Query: 417 FNSGLDSCWVKYTRSPRSRLTRGKEKSVSGNIRKHQP 527
           FNSG   C VK+   PR      KEK  SG+     P
Sbjct: 305 FNSGFQKCHVKFPIRPRGTSKVSKEKE-SGSSHDDSP 340


>SB_13226| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 492 KSVSGNIRKHQPAGAPGGVCYRQVSLSSSVTWQMRHLQELF 614
           KSV GNI  +   G   G   R V L  +V W++ + + +F
Sbjct: 9   KSVQGNIEVYIDGGVRLGTDARSVFLGRTVIWELAYKRIVF 49


>SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30)
          Length = 685

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 245 GRNVSFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVGEHAV 376
           G N ++T + PG   +C    + +  S S    H D++V  H +
Sbjct: 421 GNNATYTVTMPGRRYLCHLHGNYASGSRSGAIHHHDVRVANHKI 464


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,529,992
Number of Sequences: 59808
Number of extensions: 436520
Number of successful extensions: 1001
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)