Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40271
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   5.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   7.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.5  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 504 GNIRKHQPAGAPGGVCYRQVSLSSSVTWQM 593
           G + K  P+ A  G C   + +S S  WQM
Sbjct: 42  GCVPKPIPSYACRGRCSSYLQVSGSKIWQM 71


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -3

Query: 616 QKSSWRCLICQVTDDDKD 563
           ++ +++CL+CQ   D K+
Sbjct: 58  EEKTYQCLLCQKAFDQKN 75


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 9   LVIGLLADCASALYFHIAEGERKCFIEEIPDD 104
           ++I ++  C+SA+ F      R    EE+P+D
Sbjct: 165 VLIAIVWICSSAISFPAIVWWRAVRTEEVPED 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,583
Number of Sequences: 438
Number of extensions: 3913
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)