Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40271
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03290.1 68415.m00284 emp24/gp25L/p24 family protein similar ...    33   0.12 
At2g03040.1 68415.m00257 transmembrane protein-related low simil...    33   0.12 
At1g69460.1 68414.m07981 emp24/gp25L/p24 family protein similar ...    31   0.48 
At2g14530.1 68415.m01626 expressed protein                             29   2.5  
At3g28030.1 68416.m03499 UV hypersensitive protein (UVH3) / DNA-...    28   4.4  
At2g41910.1 68415.m05185 protein kinase family protein contains ...    28   4.4  
At1g26690.1 68414.m03251 emp24/gp25L/p24 family protein similar ...    27   7.8  

>At2g03290.1 68415.m00284 emp24/gp25L/p24 family protein similar to
           SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
           Transmembrane trafficking protein) {Homo sapiens};
           contains Pfam profile PF01105: emp24/gp25L/p24 family
          Length = 170

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 17/68 (25%), Positives = 36/68 (52%)
 Frame = +2

Query: 257 SFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVGEHAVDYANVAPKGKLTELQLRIRQ 436
           SFT+   G +V C+   +  +   + L +  D + G H+ ++ NVA K ++  ++ +++ 
Sbjct: 48  SFTAYENGSYVACI--TAIDYKPETTLTIDFDWKTGVHSKEWTNVAKKSQVDMMEYQVKT 105

Query: 437 LLGQVHQI 460
           L+  V  I
Sbjct: 106 LMDTVISI 113


>At2g03040.1 68415.m00257 transmembrane protein-related low
           similarity to SP|Q28735|TM21_RABIT Transmembrane protein
           Tmp21 precursor (21 kDa Transmembrane trafficking
           protein) (Integral membrane protein p23) {Oryctolagus
           cuniculus}
          Length = 166

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 17/68 (25%), Positives = 36/68 (52%)
 Frame = +2

Query: 257 SFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVGEHAVDYANVAPKGKLTELQLRIRQ 436
           SFT+   G +V C+   +  +   + L +  D + G H+ ++ NVA K ++  ++ +++ 
Sbjct: 91  SFTAYENGSYVACI--TAIDYKPETTLTIDFDWKTGVHSKEWTNVAKKSQVDMMEYQVKT 148

Query: 437 LLGQVHQI 460
           L+  V  I
Sbjct: 149 LMDTVISI 156


>At1g69460.1 68414.m07981 emp24/gp25L/p24 family protein similar to
           SP|Q28735 Transmembrane protein Tmp21 precursor (21 kDa
           Transmembrane trafficking protein) {Oryctolagus
           cuniculus}; contains Pfam profile: PF01105:
           emp24/gp25L/p24 family
          Length = 214

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 15/69 (21%), Positives = 33/69 (47%)
 Frame = +3

Query: 9   LVIGLLADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGM 188
           L++ + +  + +L+F +  G  KC  E+I  ++  +  Y ++  +P  G  +  T  I +
Sbjct: 13  LILAIWSPISHSLHFDLHSGRTKCIAEDIKSNSMTVGKYNID--NPHEGQALPQTHKISV 70

Query: 189 HVEVRDPND 215
            V     N+
Sbjct: 71  KVTSNSGNN 79


>At2g14530.1 68415.m01626 expressed protein
          Length = 412

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 492 KSVSGNIRKHQPAGAPGGVCYRQVSLS 572
           KSV+G ++K +PAGA  G  + Q +L+
Sbjct: 153 KSVTGELKKWRPAGADRGFTFSQYNLT 179


>At3g28030.1 68416.m03499 UV hypersensitive protein (UVH3) /
           DNA-repair protein, putative identical to UV
           hypersensitive protein [Arabidopsis thaliana]
           gi|13649704|gb|AAK37472; similar to Swiss-Prot:P14629
           DNA-repair protein complementing XP-G cells homolog
           (Xeroderma pigmentosum group G complementing protein
           homolog) [Xenopus laevis]
          Length = 1479

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +3

Query: 75  KCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDPNDRILLSR 233
           K ++EE  D    I    +EL+D +SG  ++    + +++ V  P++  L SR
Sbjct: 629 KGYLEEEADLQEAIKKSLLELHDKESGDVLEENQSVRVNLVVDKPSEDSLCSR 681


>At2g41910.1 68415.m05185 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 373

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 436 LSNPELKFCQFSLWCNICIVYSMLT 362
           L+ P  K C F ++C++C+V+ +LT
Sbjct: 344 LAQPSQKIC-FFIYCSLCVVFIILT 367


>At1g26690.1 68414.m03251 emp24/gp25L/p24 family protein similar to
           SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
           Transmembrane trafficking protein) {Homo sapiens};
           contains Pfam profile PF01105: emp24/gp25L/p24 family
          Length = 214

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +3

Query: 9   LVIGLLADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKV 131
           L + + +  + +L+F +  G  KC  E+I  ++  +  Y V
Sbjct: 13  LFLAISSQVSQSLHFELQSGRTKCISEDIKSNSMTVGKYTV 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,051,385
Number of Sequences: 28952
Number of extensions: 291754
Number of successful extensions: 774
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)