Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40270
         (358 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    26   2.0  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    25   2.6  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    25   3.5  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   4.6  

>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
 Frame = -3

Query: 263 RLLMHFCSHSANVLKRLSFPWQPP*MNSSHFFVSWL-----YEYSLK*APQGPTSPKACS 99
           RL +HF + S + + +++ P+ P  +      + W+     Y+YSL        S K   
Sbjct: 74  RLTLHFQNLSGDPVSQMATPYPPVQIELMRKIIEWIMKCDDYQYSLTTLQIQKLSRKEMG 133

Query: 98  HIGSVVGSSLMT 63
              SV+ S L T
Sbjct: 134 LAPSVIESHLHT 145


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
 Frame = +1

Query: 73  DEPTTEPICEQAFGDVGPCG-----AYFKLYSYNQET----KKCEEFIYGGCQGNDNRFN 225
           ++P  +P  ++   D+  CG     A  K+ +    T    + C E I G C  N N  N
Sbjct: 32  EKPEVKPKLQKYTVDLTKCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGSN 91

Query: 226 TLA 234
           TLA
Sbjct: 92  TLA 94


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 206 PWQPP*MNSSHFFVS 162
           PW+PP M+SS F +S
Sbjct: 180 PWKPPIMSSSAFLLS 194


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 115 DVGPCGAYFKLYSYNQETKKCEEFIY 192
           D  PCG   ++ S  Q  K   EF+Y
Sbjct: 298 DSSPCGYIIRILSGEQTVKYDREFLY 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,514,897
Number of Sequences: 5004
Number of extensions: 30499
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)