Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40270
(358 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0131 - 14030721-14030774,14030848-14031027,14032050-140323... 29 1.1
04_04_1500 + 34010819-34011016,34013267-34013308,34014195-340142... 29 1.1
09_03_0125 - 12531409-12531442,12531577-12531668,12531747-125323... 29 1.4
06_03_0335 + 19662933-19663334,19663358-19664023 28 2.5
01_03_0092 - 12386381-12386401,12386580-12386968,12388346-123885... 27 3.3
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 27 5.7
02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462,465... 27 5.7
11_06_0203 + 21186905-21187986,21189022-21189398,21189735-21189850 26 7.6
08_01_0843 - 8276619-8278991 26 7.6
08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195 26 7.6
01_06_0656 - 30926858-30927040,30927141-30927281,30927373-309274... 26 7.6
>12_02_0131 -
14030721-14030774,14030848-14031027,14032050-14032303,
14034414-14034488,14034682-14034910
Length = 263
Score = 29.1 bits (62), Expect = 1.1
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 87 GADMRAGFWRCGPL 128
GA +R GFW+CGP+
Sbjct: 64 GASVRLGFWQCGPV 77
>04_04_1500 +
34010819-34011016,34013267-34013308,34014195-34014204,
34014526-34014586,34014621-34014678,34015266-34015412,
34015643-34016205,34018942-34019728
Length = 621
Score = 29.1 bits (62), Expect = 1.1
Identities = 23/72 (31%), Positives = 28/72 (38%)
Frame = +1
Query: 34 GVLIATCLTSVMSDEPTTEPICEQAFGDVGPCGAYFKLYSYNQETKKCEEFIYGGCQGND 213
G LIAT S + +P G GP G N +TK CE F+ G C D
Sbjct: 552 GELIATISPSTPAKKPAGSAAGAAPAGRGGPGGRS------NYKTKLCENFVKGTCTFGD 605
Query: 214 NRFNTLAECEQK 249
E EQ+
Sbjct: 606 RCHFAHGENEQR 617
>09_03_0125 -
12531409-12531442,12531577-12531668,12531747-12532337,
12532454-12532789,12532899-12533156,12533867-12533971,
12534625-12534702,12535464-12535542,12535649-12535723,
12535828-12535946,12536042-12537106
Length = 943
Score = 28.7 bits (61), Expect = 1.4
Identities = 18/79 (22%), Positives = 32/79 (40%)
Frame = +1
Query: 94 ICEQAFGDVGPCGAYFKLYSYNQETKKCEEFIYGGCQGNDNRFNTLAECEQKCISNRYLR 273
+C +FG CG+ +YS + + + C D+ F L E + + LR
Sbjct: 652 LCTLSFGTTNLCGSLVSIYSCGSVSTIVNDTV---CGERDHTFRILLEFKDGRFKYQSLR 708
Query: 274 INARSFLKLMYKTMKLGIK 330
I L+ ++M +K
Sbjct: 709 IGGYYLLECSTESMNYSMK 727
>06_03_0335 + 19662933-19663334,19663358-19664023
Length = 355
Score = 27.9 bits (59), Expect = 2.5
Identities = 10/33 (30%), Positives = 23/33 (69%)
Frame = -3
Query: 353 FTYIYLIVFIPSFIVLYISLRKERALIRRYRLL 255
FT +Y+I+ + ++LY+++R R+++ +R L
Sbjct: 27 FTLLYIIIAVLVGVILYMAIRYGRSVMSEWRQL 59
>01_03_0092 -
12386381-12386401,12386580-12386968,12388346-12388541,
12388872-12388941,12389599-12389822
Length = 299
Score = 27.5 bits (58), Expect = 3.3
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -2
Query: 339 FNSFYTKLHRFIHQL-EKRACVNSKVSVTYAFLFAFGQCVETIVV 208
F SF ++ ++ L +R C+++ V +A LF +G VET VV
Sbjct: 112 FASFRGEIWSHVNFLARRRGCIDAPVLRFFAELFYYGPLVETPVV 156
>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 157 NQETKKCEEFIYGGCQGNDNRFNTLAECEQKCISNRYLRINARSF 291
N ++ C C+G D+RF T+A + + +++L + RSF
Sbjct: 1800 NSSSRGCRRKQQLRCRGRDDRFVTMAGMK---VPDKFLHVRNRSF 1841
>02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462,
4658808-4658873,4658954-4659076,4659562-4659629,
4659703-4659766,4659994-4660135,4660218-4660306,
4660574-4660637,4660870-4661021,4661124-4661261,
4661742-4661867,4661971-4662183,4662343-4662426,
4662583-4662742,4662993-4663126,4664047-4664136,
4664313-4664471,4665528-4665611,4666170-4666289,
4666338-4666391,4666899-4666945,4667556-4667598,
4667730-4668586,4668845-4668899
Length = 1081
Score = 26.6 bits (56), Expect = 5.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 55 LTSVMSDEPTTEPICEQAFGDVGPCGAYFKLYSYNQETKK 174
LTS +P E ICE+A+ C +++ + QET K
Sbjct: 1034 LTSKAQAQPNVEVICEEAYN----CVSHYHTFRLLQETVK 1069
>11_06_0203 + 21186905-21187986,21189022-21189398,21189735-21189850
Length = 524
Score = 26.2 bits (55), Expect = 7.6
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -2
Query: 318 LHRFIHQLEKRACVNSKVSVTYAFLFAFGQC 226
L R +H + R+C+++ + V A + +G+C
Sbjct: 160 LGRALHAVAVRSCIDANIFVASALVDMYGKC 190
>08_01_0843 - 8276619-8278991
Length = 790
Score = 26.2 bits (55), Expect = 7.6
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 127 CGAYFKLYSYNQETKKCEEFIYGGCQGN 210
C F+ S NQ T+ C GGC GN
Sbjct: 318 CLPGFEFLSANQSTQGCWRAQTGGCTGN 345
>08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195
Length = 837
Score = 26.2 bits (55), Expect = 7.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 127 CGAYFKLYSYNQETKKCEEFIYGGCQGNDN 216
C F+ S NQ T+ C GGC GN +
Sbjct: 318 CLPGFEFSSANQTTQGCWRVRTGGCTGNSS 347
>01_06_0656 -
30926858-30927040,30927141-30927281,30927373-30927489,
30927696-30927784,30927870-30928010,30928084-30928171,
30928280-30928342,30928544-30928699,30928778-30928870,
30929095-30929176,30929426-30929493,30929575-30930633
Length = 759
Score = 26.2 bits (55), Expect = 7.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 151 SYNQETKKCEEFIYGGCQG 207
SY E +KC + + GGC G
Sbjct: 607 SYASELEKCTKLVEGGCTG 625
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,664,831
Number of Sequences: 37544
Number of extensions: 196323
Number of successful extensions: 491
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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