Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40270
         (358 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   2.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   3.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   3.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   4.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   5.8  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 85  TEPICEQAFGDVGPCGAY 138
           T+P+C +AF +  P G +
Sbjct: 407 TKPMCVEAFQEFPPLGRF 424


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 19  LFLFTGVLIATCLTSVMSDEPTTEPICEQAFG 114
           + L  GVL+    T ++   PTT     Q FG
Sbjct: 555 IILLAGVLVCYLNTFLLLATPTTVTCILQRFG 586


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 19  LFLFTGVLIATCLTSVMSDEPTTEPICEQAFG 114
           + L  GVL+    T ++   PTT     Q FG
Sbjct: 645 IILLAGVLVCYLNTFLLLATPTTVTCILQRFG 676


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 155 TTRRRRSVKNSFTEA 199
           TTRR RSV N F  +
Sbjct: 64  TTRRLRSVTNCFVSS 78


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 232  AECEQKCISNRYLRINAR 285
            AEC++  + NR   +NAR
Sbjct: 1886 AECDRDQLVNRNYGVNAR 1903


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +1

Query: 85  TEPICEQAFGDVGPCGAY 138
           ++P+C +AF +  P G +
Sbjct: 407 SKPMCAEAFQEFPPLGRF 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,141
Number of Sequences: 438
Number of extensions: 2143
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)