Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40270
         (358 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51490.1 68418.m06386 pectinesterase family protein contains ...    28   2.1  
At5g47980.1 68418.m05927 transferase family protein similar to  ...    27   4.9  
At4g19985.1 68417.m02926 GCN5-related N-acetyltransferase (GNAT)...    27   4.9  
At5g65165.1 68418.m08196 succinate dehydrogenase, iron-sulphur s...    26   6.4  
At1g65180.1 68414.m07390 DC1 domain-containing protein contains ...    26   6.4  
At1g33280.1 68414.m04116 no apical meristem (NAM) family protein...    26   6.4  
At5g51140.1 68418.m06341 pseudouridine synthase family protein l...    26   8.5  
At5g14790.1 68418.m01735 expressed protein                             26   8.5  
At2g21340.2 68415.m02540 enhanced disease susceptibility protein...    26   8.5  
At2g21340.1 68415.m02539 enhanced disease susceptibility protein...    26   8.5  

>At5g51490.1 68418.m06386 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 536

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +1

Query: 13  SVLFLFTGVLIATCL--TSVMSDEPTTEPICEQAFGDVGPCGAYFKLYSYNQETKKCEEF 186
           S+LFL   +L+  C+   + ++D  +T+   +  + D  PC  YFK ++  Q+  +  EF
Sbjct: 9   SILFLHLILLVLLCVHPLTTVADRNSTDWCDKTPYPD--PCKCYFKNHNGFQQPTQLSEF 66


>At5g47980.1 68418.m05927 transferase family protein similar to
           alcohol acyltransferase [Fragaria x
           ananassa][GI:10121328][PMID:10810141], deacetylvindoline
           4-O-acetyltransferase [Catharanthus
           roseus][GI:4091808][PMID:9681034]
          Length = 443

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +1

Query: 220 FNTLAECEQKCISNRYL 270
           FN L+E  +KC++NR++
Sbjct: 204 FNALSEVREKCVTNRFV 220


>At4g19985.1 68417.m02926 GCN5-related N-acetyltransferase (GNAT)
           family protein contains Pfam profile PF00583:
           acetyltransferase, GNAT family
          Length = 237

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 326 IPSFIVLYISLRKERALIRRYRLLMHFCSHSANVL 222
           +P  I +YIS  K+   +   R L   C+HS N L
Sbjct: 32  LPRSIPIYISTLKKDINLEELRNLYSLCNHSCNRL 66


>At5g65165.1 68418.m08196 succinate dehydrogenase, iron-sulphur
           subunit, mitochondrial (SDH2-3) nearly identical to
           mitochondrial succinate dehydrogenase iron-sulphur
           subunit (sdh2-3) [gi:12049602] from Arabidopsis thaliana
          Length = 309

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
 Frame = +1

Query: 73  DEPTTEPICEQAFGDVGPCGAYF-----KLYSYNQET----KKCEEFIYGGCQGNDNRFN 225
           D+P ++P  +  F D+  CG        K+ + +  +    + C E I G C  N +  N
Sbjct: 77  DKPNSKPFLQSFFVDLSSCGPMVLDVLQKIKAEDDASLSYRRSCREGICGSCSMNIDGTN 136

Query: 226 TLA 234
           T+A
Sbjct: 137 TVA 139


>At1g65180.1 68414.m07390 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 653

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/55 (29%), Positives = 19/55 (34%)
 Frame = +1

Query: 127 CGAYFKLYSYNQETKKCEEFIYGGCQGNDNRFNTLAECEQKCISNRYLRINARSF 291
           CG  FK  S     +KC  F +  C       N       KC  N  L  N  S+
Sbjct: 27  CGLQFKTISDGYNCRKCRYFFHKSCSNCPKEIN---HPSHKCDKNLSLITNFASW 78


>At1g33280.1 68414.m04116 no apical meristem (NAM) family protein
           similar to CUC1 (GP:12060422)  {Arabidopsis thaliana}
           amd to NAM (GP:1279640) {Petunia x hybrida}
          Length = 305

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = -3

Query: 284 RALIRR---YRLLMHFCSHSANVLKRLSFPWQPP*MNSSHFFVSWLYEYSLK*APQGPTS 114
           R+ IRR   Y+ +  F  +    +    +P QPP     H  +S  Y+YSL   P+    
Sbjct: 178 RSFIRRESPYQGISMFELNKPEEISVHQYP-QPPMFQPHHKPLSIGYDYSLALLPRESEY 236

Query: 113 PKACSHIGSVVGS 75
            +AC   G  VG+
Sbjct: 237 QQACQPSGVEVGT 249


>At5g51140.1 68418.m06341 pseudouridine synthase family protein low
           similarity to SP|P23851 Ribosomal large subunit
           pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
           synthase) (Uracil hydrolyase) {Escherichia coli};
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 395

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 64  VMSDEPTTEPICEQAFGDVGPCGAYFK 144
           ++  EP    +C+ A   V PCG Y K
Sbjct: 138 ILHQEPDVVTVCKPASVPVHPCGQYRK 164


>At5g14790.1 68418.m01735 expressed protein
          Length = 346

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 244 QKCISNRYLRINARSFLKLMYKTMKLGIKTIK 339
           Q C+ NR  RI A++ L       +LG++ IK
Sbjct: 209 QPCLKNRNPRIRAKASLCFSRSVPRLGVEGIK 240


>At2g21340.2 68415.m02540 enhanced disease susceptibility protein,
           putative / salicylic acid induction deficient protein,
           putative similar to enhanced disease susceptibility 5
           [Arabidopsis thaliana] GI:16589070
          Length = 552

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 102 AGFWRCGPLWRLL*TIFVQPG 164
           AG W CGPL  L+ T  +  G
Sbjct: 123 AGLWLCGPLMSLIDTAVIGQG 143


>At2g21340.1 68415.m02539 enhanced disease susceptibility protein,
           putative / salicylic acid induction deficient protein,
           putative similar to enhanced disease susceptibility 5
           [Arabidopsis thaliana] GI:16589070
          Length = 555

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 102 AGFWRCGPLWRLL*TIFVQPG 164
           AG W CGPL  L+ T  +  G
Sbjct: 123 AGLWLCGPLMSLIDTAVIGQG 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,851,184
Number of Sequences: 28952
Number of extensions: 160616
Number of successful extensions: 389
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)