Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40269
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    29   0.81 
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    27   2.5  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    27   2.5  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    26   5.7  

>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 130 EVSCSFNVFTARCPKYKFSTRIVELLPLISVTH 228
           ++ C + V    CP    S R +  L L+ VTH
Sbjct: 319 KIDCQYPVAIQECPDLIMSLRFLRFLQLVKVTH 351


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 153 VHCALPEI*IFYQNSRIIASDIGHTQYVSYFTGIYRCAN 269
           VH  +P +  + Q S +   +    +Y+ Y TG+  C +
Sbjct: 605 VHALIPSLLSYNQRSHVPVEENAAIRYLRYVTGVLGCVD 643


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 91  NLRYLLSYTSLIGEVSCSFNVFTARCPKYKFSTRIVELLP 210
           NLRY LS   L+  +    N+   RC   +F+ ++ +LLP
Sbjct: 270 NLRYCLSQYILMKGIGIGINIRHTRC---EFTKQLTQLLP 306


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 124 IGEVSCSFNVFTARCPKYKFSTRIVELLPLISVTHSTFLILREFIDV 264
           + E+S S   F     K   STR  ++ P I +T S  ++ ++ I+V
Sbjct: 615 LNEISVSICDFVVASEKIAVSTRRSDVKPNIPITDSHKILFKKSIEV 661


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,503,440
Number of Sequences: 5004
Number of extensions: 46356
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)