Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40269
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13699| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_10405| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_16491| Best HMM Match : MutS_V (HMM E-Value=8.2e-11)                28   7.9  

>SB_13699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/98 (21%), Positives = 42/98 (42%)
 Frame = -1

Query: 312 MNLTRSHYYVCSFKHLHIDKFP*NKKRTVCDRYQRQ*FYYSGRKFIFRATRSEHIKRTAD 133
           M    + Y      ++H  +   +  RTVC +Y  +  +Y+ R    RAT   +I   A 
Sbjct: 171 MRTLHATYITLHAPYVHTTRHVHHTTRTVCAQYTPRTSHYTHRMCTLRAT---YITIHAP 227

Query: 132 FSYQTRVTEEVS*IYITASRNIKRLLAKTRLMKNPFYP 19
           +++ TR T  +  ++   +   + +   TR +   + P
Sbjct: 228 YAHSTRHTHRMCALHAPYAHTTRHVQHTTRTVCAHYTP 265


>SB_10405| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 368

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = -1

Query: 165 TRSEHIKRTADFSYQ-TRVTEEVS*IYITASRNIKRLLAKT 46
           T +EHI R+AD SY+ T+++E ++    T SR  + LL K+
Sbjct: 168 THNEHINRSADGSYRFTQISEGIT---DTLSREEQELLNKS 205


>SB_16491| Best HMM Match : MutS_V (HMM E-Value=8.2e-11)
          Length = 877

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 433 CCSVTNVNCYVMLKESRFKKKTSLRPRSGARKLILC 540
           CC  T V C  M   S  KK++ L+  S  + LILC
Sbjct: 533 CC--TTVKCLYMNSRSVAKKRSELQALSIGKDLILC 566


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,929,317
Number of Sequences: 59808
Number of extensions: 318148
Number of successful extensions: 482
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)