Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40267
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   111   6e-26
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   111   1e-25
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   2.1  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  111 bits (268), Expect = 6e-26
 Identities = 55/86 (63%), Positives = 65/86 (75%)
 Frame = +3

Query: 255 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 434
           GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVTV  S   KD
Sbjct: 81  GVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKD 140

Query: 435 ELIIEGNSLEDVSSSAALIQQSTTVR 512
           E+IIEGNSLE+VS SAA I+Q   VR
Sbjct: 141 EIIIEGNSLENVSQSAANIKQICNVR 166



 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 25/62 (40%), Positives = 43/62 (69%)
 Frame = +2

Query: 20  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 199
           + I  ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKK-QGNTIKFIVWHGS 61

Query: 200 KK 205
           +K
Sbjct: 62  RK 63



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +2

Query: 509 KNKDIRKFLDGLYVSEKTTV 568
           +NKDIRKFLDG+YVSE+  +
Sbjct: 166 RNKDIRKFLDGIYVSERGNI 185


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  111 bits (266), Expect = 1e-25
 Identities = 54/86 (62%), Positives = 65/86 (75%)
 Frame = +3

Query: 255 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 434
           GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVTV  S   KD
Sbjct: 81  GVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKD 140

Query: 435 ELIIEGNSLEDVSSSAALIQQSTTVR 512
           E+I+EGNSLE+VS SAA I+Q   VR
Sbjct: 141 EIILEGNSLENVSQSAANIKQICNVR 166



 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 24/62 (38%), Positives = 40/62 (64%)
 Frame = +2

Query: 20  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 199
           + I  ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKK-QGNTIKFIVWHGS 61

Query: 200 KK 205
           +K
Sbjct: 62  RK 63



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +2

Query: 509 KNKDIRKFLDGLYVSEKTTV 568
           +NKDIRKFLDG+YVSE+  +
Sbjct: 166 RNKDIRKFLDGIYVSERGNI 185


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +3

Query: 414 NSPKQKDELIIEGNSLEDVSSSAALIQQS 500
           +SPK+K +L ++G  L+ +  + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,561,648
Number of Sequences: 5004
Number of extensions: 53090
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)