Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40267
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   111   5e-25
AC084159-13|AAK39352.1|  197|Caenorhabditis elegans F-box a prot...    29   3.4  
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    28   6.0  
Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  111 bits (266), Expect = 5e-25
 Identities = 51/86 (59%), Positives = 64/86 (74%)
 Frame = +3

Query: 255 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 434
           GVT GF+YKMR+VYAHFPIN    +GN  +EIRNFLGEK +RRV +  GV    S  QKD
Sbjct: 81  GVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKD 140

Query: 435 ELIIEGNSLEDVSSSAALIQQSTTVR 512
           E+++EGN ++ VS +AA IQQST V+
Sbjct: 141 EIVVEGNDVQFVSQAAARIQQSTAVK 166



 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 28/65 (43%), Positives = 45/65 (69%)
 Frame = +2

Query: 17  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 196
           MK I +N  V  P+G+T  VK+R+V V GPRG ++++F+HL +++  +    L+V KWFG
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60

Query: 197 SKKEM 211
            +KE+
Sbjct: 61  VRKEL 65



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = +2

Query: 509 KNKDIRKFLDGLYVSEKTTVVLDD 580
           K KDIRKFLDG+YVSEKTT+V  D
Sbjct: 166 KEKDIRKFLDGIYVSEKTTIVPTD 189



 Score = 33.5 bits (73), Expect = 0.12
 Identities = 13/20 (65%), Positives = 18/20 (90%)
 Frame = +1

Query: 196 IQKGDAAVRTVCSHVENMIK 255
           ++K  AA+RTVCSH++NMIK
Sbjct: 61  VRKELAAIRTVCSHIKNMIK 80


>AC084159-13|AAK39352.1|  197|Caenorhabditis elegans F-box a protein
           protein 16 protein.
          Length = 197

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 544 KTIQELSDILILTVVDC*MRAAELETS--SKELPSMISSSFCFGELTTVTP 398
           K I   S+ L+L  VD  +R+  ++ S  S E   +     CF ELT++ P
Sbjct: 30  KAIDNTSENLLLDGVDREIRSRRVQASLSSLETREIYLGGICFNELTSILP 80


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
            protein D1007.15 protein.
          Length = 1184

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +3

Query: 258  VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 395
            ++  F Y + +++  FPI C+  +   I+ +   +G  Y+R V ++
Sbjct: 1085 LSSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130


>Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical
           protein T01H3.2 protein.
          Length = 980

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 398 RCHLYPSDVFLTQEVTYLNN*ITLSGD-TVNGEVSIHSTHLVLEAF 264
           RC L   ++F +  +T LNN + + GD +++  +   S   VL  F
Sbjct: 477 RCQLMQGELFRSVNITILNNNLQIYGDNSLSKSIDTSSIKSVLPCF 522


>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 145 NSQVFEVPFENSAGPFNCHQTRFHMDR 65
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 145 NSQVFEVPFENSAGPFNCHQTRFHMDR 65
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,252,291
Number of Sequences: 27780
Number of extensions: 303547
Number of successful extensions: 716
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)