Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40267
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim...   105   3e-23
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil...   105   3e-23
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos...   104   4e-23
At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identi...    33   0.20 
At5g50310.1 68418.m06229 kelch repeat-containing protein similar...    29   1.8  
At1g61380.1 68414.m06917 S-locus protein kinase, putative simila...    29   2.4  
At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6)...    28   4.2  
At2g19500.1 68415.m02279 FAD-binding domain-containing protein /...    28   5.6  
At3g53590.1 68416.m05919 leucine-rich repeat transmembrane prote...    27   9.7  
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas...    27   9.7  

>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
           similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
           [Arabidopsis thaliana]
          Length = 194

 Score =  105 bits (251), Expect = 3e-23
 Identities = 50/86 (58%), Positives = 62/86 (72%)
 Frame = +3

Query: 255 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 434
           GVT+GF+YKMR VYAHFPIN         IEIRNFLGEK +R+V+M  GVT+V S K KD
Sbjct: 86  GVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKD 145

Query: 435 ELIIEGNSLEDVSSSAALIQQSTTVR 512
           E++++GN +E VS S ALI Q   V+
Sbjct: 146 EIVLDGNDIELVSRSCALINQKCHVK 171



 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 26/68 (38%), Positives = 48/68 (70%), Gaps = 5/68 (7%)
 Frame = +2

Query: 17  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 181
           MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK+
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 182 EKWFGSKK 205
           + WFG++K
Sbjct: 61  DSWFGTRK 68



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 16/24 (66%), Positives = 21/24 (87%)
 Frame = +2

Query: 509 KNKDIRKFLDGLYVSEKTTVVLDD 580
           K KDIRKFLDG+YVSEK+ +V ++
Sbjct: 171 KKKDIRKFLDGIYVSEKSKIVEEE 194


>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
           to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
           thaliana]
          Length = 194

 Score =  105 bits (251), Expect = 3e-23
 Identities = 50/86 (58%), Positives = 62/86 (72%)
 Frame = +3

Query: 255 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 434
           GVT+GF+YKMR VYAHFPIN         IEIRNFLGEK +R+V+M  GVT+V S K KD
Sbjct: 86  GVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKD 145

Query: 435 ELIIEGNSLEDVSSSAALIQQSTTVR 512
           E++++GN +E VS S ALI Q   V+
Sbjct: 146 EIVLDGNDIELVSRSCALINQKCHVK 171



 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 26/68 (38%), Positives = 48/68 (70%), Gaps = 5/68 (7%)
 Frame = +2

Query: 17  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 181
           MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK+
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 182 EKWFGSKK 205
           + WFG++K
Sbjct: 61  DSWFGTRK 68



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 16/24 (66%), Positives = 21/24 (87%)
 Frame = +2

Query: 509 KNKDIRKFLDGLYVSEKTTVVLDD 580
           K KDIRKFLDG+YVSEK+ +V ++
Sbjct: 171 KKKDIRKFLDGIYVSEKSKIVEEE 194


>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
           ribosomal protein L9, cytosolic - garden pea,
           PIR2:S19978
          Length = 194

 Score =  104 bits (250), Expect = 4e-23
 Identities = 51/86 (59%), Positives = 61/86 (70%)
 Frame = +3

Query: 255 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 434
           GVT+GF Y+MR VYAHFPIN      N  IEIRNFLGEK +R+V+M  GV +V S K KD
Sbjct: 86  GVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKD 145

Query: 435 ELIIEGNSLEDVSSSAALIQQSTTVR 512
           E+I+EGN +E VS S ALI Q   V+
Sbjct: 146 EIILEGNDIELVSRSCALINQKCHVK 171



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 28/68 (41%), Positives = 48/68 (70%), Gaps = 5/68 (7%)
 Frame = +2

Query: 17  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 181
           MK I++++ + IPDG+ + V ++++ V+GPRG L R+FKHL +D +++       R LK+
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 182 EKWFGSKK 205
           + WFGS+K
Sbjct: 61  DSWFGSRK 68



 Score = 37.9 bits (84), Expect = 0.005
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = +2

Query: 509 KNKDIRKFLDGLYVSEKTTVVLDD 580
           K KDIRKFLDG+YVSEK  + +++
Sbjct: 171 KKKDIRKFLDGIYVSEKGKIAVEE 194


>At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identical
           to CLC-d chloride channel protein [Arabidopsis thaliana]
           GI:1742959
          Length = 792

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 24/76 (31%), Positives = 39/76 (51%)
 Frame = +3

Query: 306 PINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAA 485
           P   V  E  S+ ++ N   +  +R + + P  + V     + +L+IE N      SSA 
Sbjct: 706 PSPYVVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVIGLITRKDLLIEENG----ESSAV 761

Query: 486 LIQQSTTVRIRISESS 533
            +QQST+VR R SE++
Sbjct: 762 ELQQSTSVRGRYSETA 777


>At5g50310.1 68418.m06229 kelch repeat-containing protein similar to
           Kelch repeats protein 3 (SP:Q08979) [Saccharomyces
           cerevisiae]; contains Pfam PF01344: Kelch motif (6
           repeats)
          Length = 666

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = -3

Query: 250 SCSLHVNRLSSRRHLLFGSEPFLNLQETRV----YHANVNSQVFE-VPFENSAGPFNCHQ 86
           +CSL +N L     +L+G E F N Q+T V    Y  +V  Q ++ V   NS  P + HQ
Sbjct: 71  NCSLTINPLKETELILYGGE-FYNGQKTYVYGDLYRYDVEKQEWKLVSSPNSPPPRSSHQ 129


>At1g61380.1 68414.m06917 S-locus protein kinase, putative similar
           to KI domain interacting kinase 1 [Zea mays]
           gi|2735017|gb|AAB93834; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 805

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 281 LVLEAFSYSLIMFSTCEQTVLTAASPFWIR-TISQPSG 171
           +VL A    LI+F TC    +  +SP  IR T+S P G
Sbjct: 3   MVLFACLLLLIIFPTCGYAAINTSSPLSIRQTLSSPGG 40


>At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6) /
           caspase family protein similar to latex-abundant protein
           [Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
           PF00656: ICE-like protease (caspase) p20 domain
          Length = 410

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = +2

Query: 38  QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKV 181
           +++K+ DG  VHV ++ + ++    +LK+N  +  +++  + P L  V
Sbjct: 204 KELKLEDGAKVHVVNKSLPLQTLIDILKQNTGNNDIEVGKIRPTLFNV 251


>At2g19500.1 68415.m02279 FAD-binding domain-containing protein /
           cytokinin oxidase family protein similar to cytokinin
           oxidase, Zea mays [SP|Q9T0N8] [gi:3441978]
          Length = 501

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 451 PSMISS-SFCFGELTTVTPGAI 389
           PS+IS+ S  FG +TTVTPG +
Sbjct: 39  PSIISAASHDFGNITTVTPGGV 60


>At3g53590.1 68416.m05919 leucine-rich repeat transmembrane protein
           kinase, putative CLV1 receptor kinase, Arabidopsis
           thaliana, EMBL:ATU96879
          Length = 783

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 238 HVNRLSSRRHLLFGSEPFL--NLQETRVYHANVNSQVFEVPFENSAGPFNCH 89
           ++NRL    + + GS PF   NL+  +  H N N+   E+P E S  P   H
Sbjct: 42  NLNRLQVDENNITGSVPFSFGNLRSIKHLHLNNNTISGEIPVELSKLPKLVH 93


>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
           B, chloroplast (GAPB) / NADP-dependent
           glyceraldehydephosphate dehydrogenase subunit B
           identical to SP|P25857 Glyceraldehyde 3-phosphate
           dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
           (NADP-dependent glyceraldehydephosphate dehydrogenase
           subunit B) {Arabidopsis thaliana}
          Length = 447

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 41  KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI 151
           +VKI D  T+ V  +L+ V   R  LK  +  L +DI
Sbjct: 138 EVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDI 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,349,674
Number of Sequences: 28952
Number of extensions: 276285
Number of successful extensions: 687
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)